Re: [Jmol-users] No select segid command ?

OK, this is in in a much more generally useful way, I think. See http://chemapps.stolaf.edu/jmol/Jmol-13.zip ___JmolVersion=13.1.12_dev new feature: load xxx.pdb filter TYPE i,n -- loads custom text fields into the atomType property of an atom upon customized PDB file loading where i is

Re: [Jmol-users] No select segid command ?

so then for segID, it might look like: load xxx.pdb filter type 73,4 display atomtype=PROA Var proagroups = {atomtype=PROA} select *.ca and atomtype=PROA *for example * On Wed, Jan 16, 2013 at 7:21 AM, Robert Hanson hans...@stolaf.edu wrote: OK, this is in in a much more generally useful

Re: [Jmol-users] JSmol version issue

Bob, Two questions: 1) The mep problem that I'm seeing consistently produces the following message on FF while it's grinding away. Does this message suggest anything to you? A script on this page may be busy, or it may have stopped responding. You can stop the script now, or you can continue

[Jmol-users] JSmol version issue

Hi Otis, From the UK and clearing the cache before each test I get 11-13 sec for ISU and 8-9 sec for Chemagic. Mac OS 10.8.2 Safari 6.0.2 Could it be that you are physically closer to the Chemagic server on your network? All the best Nick -- 3D Organic Animations http://www.chemtube3d.com

Re: [Jmol-users] No select segid command ?

Dear Robert Hanson: Thanks so much for providing a fix for this. I know you are extremely busy, and it really demonstrates how responsive the Jmol team really is. Thanks again. Very warm regards, Angelo -- Master Java

Re: [Jmol-users] JSmol version issue

Thanks Nick, I'm in Florida, CheMagic is in North Carolina, and ISU is in Illinois, so that's not the problem. This is frustrating. I just don't get it. Nevertheless, I guess I should put 13.1.12_dev on CheMagic just to make sure it's not a server issue. Otis -- Otis Rothenberger

Re: [Jmol-users] JSmol version issue

Otis: Does it make any difference if you turn on private browsing in Safari? Philip Bays Saint Mary's College Notre Dame, IN 46556 Sent from my iPhone On Jan 16, 2013, at 9:42 AM, Otis Rothenberger osrot...@chemagic.com wrote: Thanks Nick, I'm in Florida, CheMagic is in North Carolina,

Re: [Jmol-users] How to float Jmol right in IE9?

I'm pretty sure I can help you out, Eric, but not right now. You'll need to give me some time. First shot: have to tried to wrap the jmolApplet() call in a div that has style float? -- Master Java SE, Java EE,

Re: [Jmol-users] No select segid command ?

ah, That Jmol13.zip file has a debug line in it that will vastly slow it down. Please download again if you happened to do that this morning. I've uploaded a fix. http://chemapps.stolaf.edu/jmol/Jmol-13.zip Bob On Wed, Jan 16, 2013 at 8:41 AM, Angelo Rossi angelo.raymond.ro...@gmail.com

Re: [Jmol-users] How to float Jmol right in IE9?

I'm pretty sure I can help you out, Eric, but not right now. You'll need to give me some time. First shot: have to tried to wrap the jmolApplet() call in a div that has style float? -- Master Java SE, Java EE,

Re: [Jmol-users] JSmol version issue

Otis, web inspector on safari have a panel to show this activity (network) : which files are indeed loaded, which others are loaded from cache you'll have a very informative timeline as well -Paul Le 16 janv. 2013 à 16:31, Otis Rothenberger a écrit : Phil, Still like clockwork - 40 seconds.

Re: [Jmol-users] No select segid command ?

same debug line also slows JSmol and also make reading xyz files (and perhaps PDB files) impossible. -- fix is at http://chemapps.stolaf.edu/jmol/jsmol.zip On Wed, Jan 16, 2013 at 10:02 AM, Robert Hanson hans...@stolaf.edu wrote: ah, That Jmol13.zip file has a debug line in it that will

[Jmol-users] Fixed

Ah, that fix solves my problem also - ISU and CheMagic. Both servers are now running the fixed version. Three seconds to mep on both servers. I'm happy, Mickey is happy, and Minnie is happy. Thanks, Bob Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com