[Jmol-users] Double Prompt!

2013-08-09 Thread Amjad Farooq
Paul or anyone who can help, I am trying to automate the selection and coloring of residues in JMol using the following script: ** * function residues() { var x = prompt("Enter Residues") var y = prompt("Enter Color") if (!x)return

Re: [Jmol-users] Re : Re: Mutating Residues!

2013-08-09 Thread Amjad Farooq
Paul or anyone who can help, I am trying to automate the selection and coloring of residues in JMol using the following script: *** function residues() { var x = prompt("Enter Residues") var y = prompt("Enter Color") if (!x)return e

Re: [Jmol-users] Re : Re: Mutating Residues!

2013-08-09 Thread Amjad Farooq
Hi Rolf, Thanks very much for your advice. I will look into your suggestions and get back to you. Amjad *AMJAD FAROOQ PhD DIC | Associate Professor Dept of Biochemistry & Molecular Biology | Miller School of Medicine | University of Miami | Miami | FL 33136 Located @ Gautier Building #217 | Mail

Re: [Jmol-users] Simple question on echo with variable text

2013-08-09 Thread Angel Herráez
Hello Yes, it can be done. Use Jmol's own variable for the frame number, that will update automatically as the animation runs: _modelNumber See http://chemapps.stolaf.edu/jmol/docs/#jmolmathread-onlyvariables So you just do: set echo top; echo @_modelNumber; // or echo @_currentModelNumberInF

[Jmol-users] How to get model names

2013-08-09 Thread björn
Hi all, I use jsmol and try to select a specific model. I know that i can select proteins and not proteins, but this not really helps me. So my question is how can i get a list of all model wich are loaded or is it possible to load files whit a distinct name? Hope somebody can help me. Best t

Re: [Jmol-users] Re : Re: Mutating Residues!

2013-08-09 Thread Rolf Huehne
On 08/08/2013 08:31 PM, Amjad Farooq wrote: > Paul, > > Thanks for your input. But, I do not believe Chimera is a web-based > application. I am looking for a web-based application to perform mutations. > Although an external program might not be web-based you could still use it for doing the mutat