There are some new syntaxes that also make this particular task very easy.
By the way, see the RCSB beta site, which has a new "Ligand in pocket"
view. For example, the Ligand tab below the applet at
http://ccnightly.rcsb.org/pdb/explore/jmol.do?structureId=1eve&bionumber=1
This utilizes the CON
___JmolVersion="14.0.5"
JmolVersion="14.0.5_dev_2014.01.09"
bug fix: LCAOCartoon translucency broken
bug fix: translucent backbone broken
bug fix: pqr,p2n readers broken
bug fix: isosurface map property xxx can fail if surface is a
fragment that (somehow) has a point not associated with
Thanks Maciek,
That worked a treat!
Glen
On 09/01/14 12:01, Maciek Wójcikowski wrote:
> Hi Glen,
>
> Have you tried double within function? I use following command to
> display residues within 10A from any ligand:
>
> display within(groups,within(10,TRUE,*/2))
>
> Note: receptor is model #1 and
Hi Glen,
Have you tried double within function? I use following command to display
residues within 10A from any ligand:
display within(groups,within(10,TRUE,*/2))
Note: receptor is model #1 and multiple ligands are in model 2 as frames.
Change "*/2" to your ligand selection.
Pozdrawiam, |
Hi all,
After loading a PDB file I'm trying to restrict the view to the
environment (surrounding residues) of a specific ligand. I'm able to
select atoms within a given distance, but for amino acids that are
truncated due to the distance cut-off I'd like to show the whole
residue. Put another way,
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