[Jmol-users] JSmol menu doesn't open in FirstGlance

2014-04-13 Thread Eric Martz
I cannot seem to get the JSmol menu to open (14.0.4): http://firstglance.jmol.org/fg.htm?mol=1d66use=html5 For comparison, the menu opens just fine with the Java applet: http://firstglance.jmol.org/fg.htm?mol=1d66 I have the same problem with JSmol 14.0.13 in local testing. Is JSmol too close

[Jmol-users] Hydrogen in water bug

2014-04-13 Thread Eric Martz
Dear Bob, Current Jmol does not recognize the hydrogen in water as belonging to water. As The hydrogens are in 'hoh' but not in 'water'. This bug appears to have crept in between 14.0.11 and 14.0.12. Consider 7AHL which has 818 water oxygens and 1,636 water hydrogens, for 2,454 total water

Re: [Jmol-users] Problem with Test2.htm CONFIRMATION

2014-04-13 Thread Eric Martz
I confirm something similar, Otis, but not random. 100% reproducible: in Firefox on Mac OS 10.9.1 Mavericks. I am not doing anything else concurrently. No inducing activity is needed. When I run test2.htm from the URL you gave, a small molecule (caffeine?) appears in JSmol. When I rotate that,

Re: [Jmol-users] Problem with Test2.htm CONFIRMATION

2014-04-13 Thread Eric Martz
From the online URL http://chemapps.stolaf.edu/jmol/jsmol/test2.htm In addition to Firefox, I also see the disappearance with slight rotation in Safari and Chrome (again, on Mac OS 10.9.1 Mavericks). Those browsers will not run test2.htm from local files (network error is reported), so I can

Re: [Jmol-users] Problem with Test2.htm CONFIRMATION

2014-04-13 Thread Otis Rothenberger
I'm running 14.1.12_2014.3.21 and it's OK Mac Safari, Chrome, and Firefox. This is OS 10.9.2 Mavericks. I've been keeping a close eye on iPad, and this version of JSmol runs really well on iPad Air and iPad 2. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Apr 13, 2014,

Re: [Jmol-users] Problem with Test2.htm CONFIRMATION

2014-04-13 Thread Philip Bays
I see the same issue on my iMac running 10.9.2, Safari 7.0.3 or Firefox 27.0.1 and JSmol ….4.10 running locally or over the network.Have not tried other browsers. It’s as if something is going on in the background. For me the manipulation of the structure is quite jerky, freezes, then is

Re: [Jmol-users] Problem with Test2.htm CONFIRMATION

2014-04-13 Thread Pshemak Maslak
I can confirm these observations: At http://chemapps.stolaf.edu/jmol/jsmol/test2.htm caffeine disappear when rotated with the mouse on Mac (OS X, 10.9.2) in Firefox (28) and in Safari (7.0.3) The same site/molecule works fin in Firefox(28)/Win 7. PM On 4/13/2014 10:09 PM, Philip Bays