Re: [Jmol-users] jsmol php

The question would be -- what's the call from the *client* On Sat, Feb 28, 2015 at 12:23 PM, Otis Rothenberger osrot...@chemagic.com wrote: Bob, I’m loading pdb files from RCSB via AJAX and my server. This works with no problem, but I just noticed that jsmol.php is somehow involved in this

[Jmol-users] jsmol php

Bob, I’m loading pdb files from RCSB via AJAX and my server. This works with no problem, but I just noticed that jsmol.php is somehow involved in this process. Is that correct? As a point of information, this is the call from my server:

Re: [Jmol-users] mmcif reading problem?

That's fair enough. Thanks for clarifying the situation. Cheers Simon Quoting Robert Hanson hans...@stolaf.edu: The difference is that the mmCIF reader was split off from the CIF reader. In the past, the CIF reader included all the macromolecule code, and somewhere along the way of

Re: [Jmol-users] jsmol php

Bob, The call from the client is a Jquery call to an .aspx script on my server that reads the remote file and returns it as text. Here’s the actual call to the client for 1smd: http://chemistry.illinoisstate.edu/osrothen/models.aspx?name2pdb=1smd

[Jmol-users] refining selection using within

I can select GC base pairs within a DNA stretch using: within(BASEPAIR,GC). Let's say I have 10 such pairs. Is there a way to select any specific pair from that set? Thanks, PM -- Dive into the World of Parallel

Re: [Jmol-users] refining selection using within

Two ways you can do this: You should be able to do this: *calculate hbondsx = {*}.find(~d~G:C, true);* *select on group @{x[1]}* However, there is a bug there. (Now fixed.) Alternatively, you could load DSSR annotations, which gives you detailed RNA or DNA base information: *load