Bob,
Both my problems are fixed. I’ll continue working with it during the course of
the day as I continue to clean up my JavaScript and server scripts.
By the way, this is the new model kit - not yet running new JSmol:
http://chemagic.com/molecules/VMKMINInotes.htm
It makes extensive use of
OK, let's try again, please. I really appreciate all this testing. Rolf, I
am especially interested in if this fixes your JenaLib startup problem.
Bob
http://sourceforge.net/projects/jmol/files/Jmol-beta/Jmol%2014.3/Jmol%2014.3.16/Jmol-14.3.16_2015.08.25-binary.zip/download
The deferred applet uses a small image (light blue circular arrow) to
indicate that the model needs to be activated. That image
(play_make_live.jpg) resides in j2s/img subdirectory. It has a tooltip
(activate 3D model) associated with it.
Can that image be replaced with another and its
On 08/25/2015 04:28 PM, Robert Hanson wrote:
OK, let's try again, please. I really appreciate all this testing. Rolf, I
am especially interested in if this fixes your JenaLib startup problem.
I'm sure you can put anything in there you want.
A jQuery reference to its div would be Jmol.$(jmolApplet0,coverdiv)
Bob
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I do see this draw error - wasn’t familiar with the shorthand notation.
Non-shorthand notation seems to work for me OK.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Aug 25, 2015, at 2:29 PM, Paul PILLOT paulpil...@gmail.com wrote:
I have also encountered a problem with
Hi Bob,
the 2 error messages on startup are displayed on MacOS X.10.5, Safari 8.0.8
TypeError: undefined is not an object (evaluating
'J.api.Interface.getInterface') try/catch path:
0 function (b, d)
args[0]=TypeError: undefined is not an object (evaluating 'J.api.Int...
args[1]=function ()
Do these errors only show up on your web page, or do they show up using some of
Bob’s sample pages? I have the newest on both a local server and on the campus
server, but not integrated into my web pages yet. But I can access one of
Bob's samples from that server to see what happens. I am
Thanks Otis,
I am also running pages from my local web server (localhost). I haven’t spotted
the setting you are referring to.
I have made further tests with firefox 40 and Chrome 44.
The three browsers give the same consistent error messages (that don’t prevent
jsmol from working).
Paul
Le
Bob and Paul,
I’m not seeing this (below) in MacOS X 10.10.4 (Yosemite) and Safari 8.0.7.
I should mention that I’m running locally with internet connection - i.e. all
my AJAX remote calls working.
This means that I run Safari with “Disable Local File Restrictions” checked.
Otis
--
Otis
On Mon, Aug 24, 2015 at 9:30 PM, Otis Rothenberger osrot...@chemagic.com
wrote:
Bob,
In the world of my small molecule app, I only found these two problems
with the new JSmol:
1) The calculate partial charge - MEP special case for alkanes is an easy
kludge fix per my previous note. This
Incredible, Bob! Perfection in one line! Voila!
(I suspect there are only a handful of people in the world who could
come up with that second line of code, and I'm not one of them. Well
I'll learn a bit more about Jmol code from your amazing line of code.)
Yes you have earned a big grin many
This generates a nice tab-delimited (spreadsheet ready) list of atom
properties:
x =
jmolEvaluate('{occupancy1.0}.label(%3n\t%4R\t%3E\t%3c\t%4e\t%a\t%3A\t%3.2Q\t%3.2t)');
Like this:
Group SeqNo Ins Chain Element AtomAltLoc Occ Temp
GLU 59 AN
JmolScript
b = {occupancy1.0}.label(%3n\t%4R\t%3E\t%3c\t%4e\t%a\t%3A\t%3.2Q\t%3.2t)
print {*}.atomIndex.all[1][b.length].add(1).join(b).join(\t,true)
/JmolScript
:)
Bob
On Tue, Aug 25, 2015 at 6:31 PM, Eric Martz ema...@microbio.umass.edu
wrote:
This generates a nice tab-delimited
with right-justification of the serial numbers:
{*}.atomIndex.all[1][b.length].add(1).format(%5i).join(b).join(\t,true)
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Ah! I know what that is
On Tue, Aug 25, 2015 at 1:29 PM, Paul PILLOT paulpil...@gmail.com wrote:
I have also encountered a problem with the shorthand / in fractional
coordinates :
draw pl1 plane {0 0 0/} {1 0 0/} {1/2 1 0/};
doesn’t work : Erreur du compilateur de script: spécification
Rolf, the issue is the move commands at the end of your start-up script. I
can duplicate the lock-up problem on Windows with that, so I should be able
to figure out what is going on there.
Bob
--
Thanks Bob,
I knew I was going to have to un-kludge, but kludging is fun - makes me learn
more Jmol script. I had no idea that you could do this:
{selection}.length
That can come in handy.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Aug 25, 2015, at 7:01 AM, Robert
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