Re: [Jmol-users] Rename chain?

Interesting idea, Angel. But part of my purpose is to be able to create crystal symmetry PDB files that can be handled by FirstGlance as it is. It assumes that each chain has a different name and many of its tools are coded under that assumption. With all the other power in Jmol, it seems

Re: [Jmol-users] Rename chain?

Eric, You could use variables that you assign and then select by those e.g. chainA = {chain=A and 1.1} chainB = {chain=B and 1.1} chainC = {chain=C and 1.1} chainG = {chain=A and 2.1} chainH = {chain=B and 2.1} chainI = {chain=C and 2.1} then select chainG

Re: [Jmol-users] Rename chain?

Dear Bob, Like Angel, I'm a little unsure what your reply means. Is there no way to change the chain name assigned to specified atoms? If not, I think it would be very useful. -Eric On 6/22/16 12:37 PM, Robert Hanson wrote: Yes, sorry, that's a failure to throw an error. Fixed. On Sun,

Re: [Jmol-users] Wildcard for atom properties

Thank you for your help, Rolf. I am not always sure what properties are available, or even how they are named. The full output is useful. Matt From: Rolf Huehne [rolf.hue...@leibniz-fli.de] Sent: Wednesday, June 22, 2016 3:30 PM To:

Re: [Jmol-users] Wildcard for atom properties

On 06/22/2016 09:02 PM, Kubasik, Matthew A. wrote: > Rolf, > > Sorry, I switched conventions, which is confusing everything. > > So, yes, "print {atomno=3}.a?" works to print atom properties with names > beginning with "a", but I thought "print {atomno=3}.?" would give ALL atom > properties. >

Re: [Jmol-users] Wildcard for atom properties

Rolf, Sorry, I switched conventions, which is confusing everything. So, yes, "print {atomno=3}.a?" works to print atom properties with names beginning with "a", but I thought "print {atomno=3}.?" would give ALL atom properties. Same as, "print @3.a?" works, but I thought "print @3.?"

Re: [Jmol-users] Wildcard for atom properties

On 06/22/2016 08:25 PM, Kubasik, Matthew A. wrote: > Bob and List, > > Using the stand alone app on a Mac (10.11.5), I cannot seem to get the > wildcard for atom properties to work as I would expect from > > http://chemapps.stolaf.edu/jmol/docs/index.htm?ver=14.6.0_2016.06.14#atomproperties. > >

Re: [Jmol-users] Compare Seems to Be Broken 14.6.0_2016 05 24

Steve was actually looking at ones that were nominally mine. I know one was my laptop and another was the desktop. I think we had some mac laptops at one point that are gone. All of the ip’s he had for for Apple devices. We decided to cancel them all and see who complains:-) > On Jun

[Jmol-users] Wildcard for atom properties

Bob and List, Using the stand alone app on a Mac (10.11.5), I cannot seem to get the wildcard for atom properties to work as I would expect from http://chemapps.stolaf.edu/jmol/docs/index.htm?ver=14.6.0_2016.06.14#atomproperties. The doc says print {atomno=3}.a? will give the atom properties

Re: [Jmol-users] Compare Seems to Be Broken 14.6.0_2016 05 24

Yes, that helps. Broken in 14.5.5. Fixed in next release. (tonight) On Fri, Jun 17, 2016 at 10:54 AM, Otis Rothenberger wrote: > Bob, > > If it helps, 14.4.4_2016.03.25 is a few days after you fixed the click > invert and compare IS WORKING in this version. > > Otis > -- >

Re: [Jmol-users] Rename chain?

Bob, do you mean it is a failure NOT to throw an error? >From the doc I understand, as Eric said, that chain ID cannot be reassigned El 22 Jun 2016 a las 12:37, Robert Hanson escribió: > Yes, sorry,  that's a failure to throw an error. Fixed. > > On Sun, Jun 19, 2016 at 8:43 PM, Eric Martz

Re: [Jmol-users] Rename chain?

Yes, sorry, that's a failure to throw an error. Fixed. On Sun, Jun 19, 2016 at 8:43 PM, Eric Martz wrote: > How do I change the name of a chain from e.g. A to B? > > For example, I load chain A, then load append the same chain A, then > translate selected 2.1. > >