Re: [Jmol-users] Jmol Crash -> Firefox crash (error while instantiating applet)

2008-04-29 Thread Jason Persampieri
gt; wrote: > > Not Found > > The requested URL /~pappy/clotelab/lm/getResults.php was not found on > this server. > > > Apache/2.0.54 Server at www.clavius.com Port 80 > > Jason Persampieri wro

Re: [Jmol-users] Jmol Crash -> Firefox crash (error while instantiating applet)

2008-04-29 Thread Jason Persampieri
Apr 29, 2008 at 1:57 PM, Bob Hanson <[EMAIL PROTECTED]> wrote: > What's that link again? > > Jason Persampieri wrote: > > > My HTML (and CSS) now validate, and I've updated to jmol 11.4.2. > > <http://11.4.2.> > > > > Sadly, the crash still oc

Re: [Jmol-users] Jmol Crash -> Firefox crash (error while instantiating applet)

2008-04-29 Thread Jason Persampieri
Java experience to go on here. _jason On Tue, Apr 29, 2008 at 2:24 AM, Bob Hanson <[EMAIL PROTECTED]> wrote: > Well, there might be HTML editors that can ease your pain. But I think > that's the real problem. > > Jason Persampieri wrote: > > > Bob, > > > &

Re: [Jmol-users] Jmol Crash -> Firefox crash (error while instantiating applet)

2008-04-28 Thread Jason Persampieri
Bob, Hehe. The page (which I inherited) was originally a spaghetti of divs and php code all intermingled. What's left was the minimum necessary to cause the crash after culling out as much as I could. When I properly format it, the crash goes away... but sadly not in the 'full' page. Believe

[Jmol-users] Jmol Crash -> Firefox crash (error while instantiating applet)

2008-04-28 Thread Jason Persampieri
aneous s from my page, the error goes away (in this simplified version of the page... that's not a usable "fix") Aaargh! Any help would be greatly appreciated. Jason Persampieri Programmer Boston College - Bioinformatics (full error text with tracing info follows) Java Plug-in

[Jmol-users] more synchronization fun - 2 (mostly) different models

2007-08-08 Thread Jason Persampieri
I have 2 different models (a normal rna structure, and just its backbone). Unfortunately, they are 'positioned' in different coordinate systems. Forgetting the *model's* rotation for a second (something I'll have to deal with next), I want to synchronize camera rotation on the two. It seems the mo

Re: [Jmol-users] Mouse synchronization between 2 or more jmol applets

2007-08-07 Thread Jason Persampieri
> > >The slave applet is always one step behind the master applet. This is > >very obvious after zoom changes with the mouse scroll wheel. It is > >less obvious with rotations because of the very small difference, but > >the difference is still there. > > > > > > > There should be a slight delay, p

Re: [Jmol-users] Mouse synchronization between 2 or more jmol applets

2007-08-06 Thread Jason Persampieri
On 8/6/07, Bob Hanson <[EMAIL PROTECTED]> wrote: > > Jason Persampieri wrote: > > > Although they don't appear synchronized at all to me. > > > Jason, on what platform? PC or Mac? > > Are you seeing the borders go purple? (they should) > > Try cl

Re: [Jmol-users] Mouse synchronization between 2 or more jmol applets

2007-08-06 Thread Jason Persampieri
try these: http://chemapps.stolaf.edu/jmol/docs/examples-11/sync.htm http://chemapps.stolaf.edu/jmol/docs/examples-11/sync4.htm Although they don't appear synchronized at all to me. On 8/6/07, Frieda Reichsman <[EMAIL PROTECTED]> wrote: > > Pages not found, from these links. > Frieda > > > On A

[Jmol-users] Mouse synchronization between 2 or more jmol applets

2007-08-06 Thread Jason Persampieri
Cool. This is exactly what I've been doing (work-in-progress) http://clavius.bc.edu/~pappy/clotelab/localmove/getResults.php?id=739333987 Except, I look for 'newOrientation' and only update on that. Seems to be a lit

[Jmol-users] using jmolSetAtomCoord

2007-07-24 Thread Jason Persampieri
Howdy, New Jmol user here, and of course I want to jump straight in to the 'experimental' stuff :) I am using version 11.2.4, the applet module, and have done testing in several browsers (incl Opera and Firefox). In short, nothing (visually) happens when calling jmolSetAtomCoord (nor jmolSetAto