try these:
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync.htm
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync4.htm
Although they don't appear synchronized at all to me.
On 8/6/07, Frieda Reichsman <[EMAIL PROTECTED]> wrote:
>
> Pages not found, from these links.
> Frieda
>
>
> On Aug 6, 2007, at 2:41 PM, Bob Hanson wrote:
>
> > If you are interested in this syncing business, please try
> >
> > http://chemapps.stolaf.edu/jmol/examples-11/sync.htm
> >
> > and
> >
> > http://chemapps.stolaf.edu/jmol/examples-11/sync4.htm
> >
> >
> > This is a totally different way to sync the applets -- with applets
> > talking directly to each other (no intermediate JavaScript). It's
> > actually part of Jmol 11 already, just not advertised. The methods
> > are:
> >
> > _jmolGetApplet("A").syncScript("slave") // designate as slave applet
> >
> > _jmolGetApplet("A").syncScript("on") // designate as driver and turn
> > syncing on
> >
> > _jmolGetApplet("A").syncScript("off") // stop syncing
> >
> > I think you have to designate the slaves before you start syncing.
> >
> >
> > I'm interested in whether this works better on Macs than the
> > setTimeout
> > polling business of compare.htm
> >
> > Bob
> >
> >
> >
> > Rolf Huehne wrote:
> >
> >> Bob Hanson wrote:
> >>
> >>
> >>> Eric Martz wrote:
> >>>
> >>>
> >>>
> >>>> I surmise that it is still not possible to make the mouse actions
> >>>> (rotate, zoom at least) in one jmol applet propagate to other
> >>>> specified jmol applets on the same web page, thereby synchronizing
> >>>> their mouse-controlled movements. Again, I'd like to advocate
> >>>> for this.
> >>>>
> >>>>
> >>>>
> >>>>
> >>> I think it is possible.
> >>>
> >>>
> >>>
> >>>> Chime has mouse synchronization and it is fantastic for
> >>>> comparing two
> >>>> molecules. If you orient the two molecules in alignment at the
> >>>> outset, mouse-controlled-rotations and zooms occur on both
> >>>> molecules.
> >>>> This makes comparisons ever so much easier and better. I'd like
> >>>> to do
> >>>> some 2-molecule comparisons in upcoming Jmol tutorials, but without
> >>>> synchronization, it is much less useful.
> >>>>
> >>>> In Chime, synchronization could be controlled only at embed time
> >>>> (equivalent to <applet> parameters for Jmol). First, one needed
> >>>> "sendmouse=true" and then one needed "target=[chime_name]" for each
> >>>> Chime whose movements are to be controlled by the one containing
> >>>> these embed tags. I have seen pages with six Chimes, where all
> >>>> followed the mouse actions in any one. Amazing to behold!
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>> This, of course, is rather inflexible. With Jmol, synchronization is
> >>> carried out using a JavaScript timer:
> >>>
> >>> syncEnabled=true
> >>>
> >>> function startSync() {
> >>> syncEnabled = true
> >>> setTimeout("sync()",100)
> >>> }
> >>>
> >>> function stopSync() {
> >>> syncEnabled = false
> >>> }
> >>>
> >>>
> >>> sLast = ''
> >>> inSync=false
> >>> function sync() {
> >>> if (inSync)return
> >>> inSync=true
> >>> if (syncEnabled) {
> >>> var s = jmolGetPropertyAsArray("orientationInfo","","A").moveTo
> >>> if (s != sLast)jmolScriptWait(s.replace(/1\.0/,"0.1"),"B")
> >>> sLast = s
> >>> inSync=false
> >>> startSync()
> >>> }
> >>> inSync=false
> >>> }
> >>>
> >>> In this way, one has far more control over the outcome than what
> >>> Chime
> >>> could do (I think). True, it's a bit more involved, but it
> >>> registers ANY
> >>> orientation change (spinning, for example), not just those generated
> >>> with the mouse. I think an argument could be made that this is
> >>> exactly
> >>> what JavaScript is for.
> >>>
> >>> See http://chemapps.stolaf.edu/jmol/docs/examples-11/compare2.htm
> >>>
> >>> I'm interested if this works on all browsers. I only tested it on
> >>> a PC
> >>> running Windows with Firefox.
> >>>
> >>>
> >>>
> >>
> >> It worked with konqueror 3.5.5 on OpenSuSE 10.2.
> >>
> >> It didn't work with Firefox 2.0.0.5 on OpenSuSE 10.2.
> >> The PDB file was loaded only in the left applet after clicking on
> >> "load
> >> PDB file". After manually loading the file in the right applet
> >> there was
> >> no synchronization and the border around the applet always stayed
> >> white.
> >> (Javascript error: applet.loadInline is not a function)
> >>
> >> Regards,
> >> Rolf
> >>
> >> ---------------------------------------------------------------------
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> >>
> >
> >
> > --
> > Robert M. Hanson
> > Professor of Chemistry
> > St. Olaf College
> > Northfield, MN
> > http://www.stolaf.edu/people/hansonr
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
> >
> >
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