[Jmol-users] ScriptWindow method scope

() sendConsoleMessage(String strStatus) Are there special reasons to protect these methods? Is it possible to make them public again? If they can not be public, are there anyway to use the console window from outside the Jmol application? Thanks, Li Yang

[Jmol-users] notifyFileLoaded did not notify

yFileLoaded used to work for both cases before >11.4.X. Is these a known issue? If this is intended behavior, is there any way to be notified when loading a file script failed? Thanks in advance, Li Yang -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf

Re: [Jmol-users] Bug with chain numbers of PBD files??

Correction to previous email. Second example should be 2DHB http://www.rcsb.org/pdb/files/2DBH.pdb -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Li Yang Sent: Friday, February 15, 2008 5:25 PM To: jmol-users@lists.sourceforge.net Subject: [Jmol-users

[Jmol-users] Bug with chain numbers of PBD files??

B site is still running Jmol version 10.2. Could Jmol developers please check this issue? Thanks, Li Yang - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.a

Re: [Jmol-users] debug print out for popup?

Hi Bob, The Java version in MATLAB (application) is JRE 1.6. Since Jmol code did not change it must be some changes in MATLAB side. I need to look at into it more. But I will try your suggestion first. As always thank you very much for your timely answers. Li Yang -Original Message

Re: [Jmol-users] debug print out for popup?

ol seemed to add the path of the directory where the application starts to the file name and it can not find the file even it is in current directory. Is this intended behavior? Thanks, Li Yang -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROT

[Jmol-users] debug print out for popup?

Hi Bob, I am embedding Jmol 11.4.RC in my applications. Whenever I right-click to bring up the context menu, I got this line print to my log window. It looks like a debug statement. viewer.getBooleanProperty(perspectivedepth) - unrecognized Thanks, Li Yang

Re: [Jmol-users] Debug statements?

-- forgot about that one. It will be out. For now, can you live with it? Li Yang wrote: > Hi Bob, > > > > I am running JMol 11.3.49. But I kept getting this output statement > (debug statements?) on my command window when open a new file. > > > > scaleDEfPPA

[Jmol-users] Debug statements?

, Li Yang - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse012070mrt/direct/01/___ Jmol

Re: [Jmol-users] Jmol official release version

Hi Bob, Thanks for the information and the great work. There are so many great new features in new Jmol. I want to settle down on the stable official release version and work with it. Thanks, Li Yang -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of

[Jmol-users] Jmol official release version

Hi Bob, The current Jmol official release version is 11.2.14. But the prerelease is already 11.3.44. Do you plan to have new official release soon? If so, when will that be? Thanks, Li Yang - This SF.net email

Re: [Jmol-users] SMILES in Jmol?

Thank you, Egon. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Egon Willighagen Sent: Friday, August 24, 2007 7:11 AM To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] SMILES in Jmol? Hi Li, On 8/21/07, Li Yang <[EMAIL PROTECTED]>

[Jmol-users] SMILES in Jmol?

Hi Jmol gurus, Has anyone try view SMILES molecules in Jmol? Are there any examples and how-to? I noticed there is SMILES package in Jmol. Thanks, Li Yang - This SF.net email is sponsored by: Splunk Inc

Re: [Jmol-users] Thread issues in ScriptWindow

Thank you. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Bob Hanson Sent: Thursday, August 16, 2007 2:59 PM To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Thread issues in ScriptWindow Li Yang wrote: > Hi Bob, > > > >

[Jmol-users] Thread issues in ScriptWindow

this and put the call to these Swing components to SwingUtilities.invokeLater or SwingUtilities.invokeAndWait? Thank you very much. Li Yang //-- ---// Below is the thread warning A Swing component is being

[Jmol-users] ArrayIndexOutOfBoundsException and hang the viewer

a look at this? Thanks, Li Yang - This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser

[Jmol-users] Get NullPointerException with new Jmol version 11.0.3

of calling JmolAdapter and JmolSimpleViewer? Thanks, Li Yang - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data