there. This is consistent with other
paradigms for programming in Javascript, such as those associated with jQuery
UI and Bootstrap JS.
The first paragraph of this page provides some rationale too.
Cheers, Mike
Michael Evans
Freshman Chemistry Lab Coordinator
Georgia Institute of Technology
(502
(Not Found)--maybe a .map
where a .js should be?
Cheers, Mike
Michael Evans
Freshman Chemistry Lab Coordinator
Georgia Institute of Technology
(502) 439-2540 | mevan...@gmail.com
On Aug 23, 2013, at 1:44 PM, Robert Hanson hans...@stolaf.edu wrote:
Jmol users ---
Ah, for those 258 people
Eric,
You should give JSmol a try! Depending somewhat on the complexity of your
code, I think you'll find the switch pretty easy... :-) For me a few mass
find/replaces did the trick.
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
On Sun, Jun 16
Just tested on an iPad 2, and the demos (test2.htm and simple2.htm) are
working for me.
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
On Wed, May 1, 2013 at 5:12 PM, Robert Hanson hans...@stolaf.edu wrote:
thanks for the tip -- what page
Thanks for the tips, Otis Angel! I'll try these out when I get a chance.
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
On Sat, Apr 27, 2013 at 7:34 AM, Otis Rothenberger osrot...@chemagic.comwrote:
Michael,
I'm not sure if you mean mouse
the atomic positions of the two models match, but I don't know if
one of two models in the Jmol window can be frozen in place.
Any idea if this is possible, and if so, how it could be done? I'd rather
not resort to two separate applets. Thanks!
Cheers, Mike
---
Michael Evans
Department
orbitals and electrostatic potential. The output can be
downloaded.
I could be wrong, but I *think* the .MO files that come out of a Mopac
WebMO job contain information about electrostatic potential.
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
Whomp, I stand corrected! Thanks, Angel and Otis.
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
On Thu, Apr 25, 2013 at 2:45 PM, Otis Rothenberger osrot...@chemagic.comwrote:
Hi Birgit,
Jmol can calculate MMFF94 partial charges
Wow, where have I been? This works great. Works really well for grabbing
orientation info too. Thanks, Bob.
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
On Mon, Mar 25, 2013 at 5:23 PM, Robert Hanson hans...@stolaf.edu wrote:
Well, you know
,
touchDragFactor: 0.15,
multipleBondSpacing: 4,
Be sure to try it on your smart phone.
Comments? Suggestions?
Bob
--
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
--
Everyone hates
each other
at some orientations.
Is there a simple way to deal with these issues?
Thanks,
PM
On Sun, Mar 10, 2013 at 2:19 PM, Michael Evans evan...@illinois.eduwrote:
Jmol'ers,
--
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
Bob
On Sun, Mar 10, 2013 at 2:19 PM, Michael Evans evan...@illinois.eduwrote:
Jmol'ers,
I am having trouble using lcaocartoon in a very specific case. If you
look on this page, the antibonding orbitals render fine:
http://butane.chem.illinois.edu/jsmoore/Experimental/DFE.html
However
://chemapps.stolaf.edu/jmol/docs/examples-12/new.htm
An sp3d lobe renders fine, but nothing happens when I try lcaocartoon
create -sp3d. Am I missing something?
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
javascript:_e({}, 'cvml',
'ngree...@liverpool.ac.uk');
WWW Pages:http://www.chemtube3d.com
Tel:+44 (0)151-794-3506 (3500 secretary)
Dept Fax: +44 (0)151-794-3588
--
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
, February 5, 1900
--
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
--
Everyone hates slow websites. So do we.
Make your web apps faster with AppDynamics
Download AppDynamics Lite
Works for me, big guy. The page loads using Java but the HTML5 Version link
works fine for me.
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
On Wed, Feb 27, 2013 at 3:16 PM, Daniel Barich bari...@kenyon.edu wrote:
My page is still
at Centre for the Governor's Scholars Program back in 2003.
Hard to believe it's been ten years since then...I'm sure the campus is as
beautiful as ever!
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
On Fri, Feb 22, 2013 at 12:08 PM, Jennifer L. Muzyka
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University
Agreed, Otis. I realized after reading your message that a version of JSmol
that worked that way would be highly desirable, provided the process of
loading files as needed is acceptable from a user experience perspective.
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore
Definitely possible! Use isosurface surf1 mo 3 and isosurface surf2 mo
5, for example.
Cheers, Mike
On Monday, January 28, 2013, Jonathan Gough wrote:
I know you can show a single MO (from a gamess log file), but is there a
way to visualize 2 of them simultaneously?
For example if I wanted
:
script: set antialiasDisplay;background white;load caffeine.mol;zoomTo 2
50;background blue
On Sat, Jan 26, 2013 at 4:33 AM, Michael Evans evan...@illinois.eduwrote:
I am...I should be a little more specific. I had a zoom command in the
script parameter of the Info object, and that caused
using find/replace and regular expressions, this
bug/feature/potentiality had me beating my head against the wall.
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
Hanson wrote:
I'm certainly not seeing that. Are you using the latest at
http://chemapps.stolaf.edu/jmol/jsmol.zip ?
On Fri, Jan 25, 2013 at 10:06 PM, Michael Evans
evan...@illinois.edujavascript:_e({}, 'cvml', 'evan...@illinois.edu');
wrote:
Hey all! In JSmol, running the zoom command
Bob,
Not sure if I'm the only one having this problem, but I can't get jsmol.zip
to decompress properly. On OS X 10.8.2, Archive Utility hangs while trying
to unzip it.
I both hope and don't hope it's just me! :-P
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
ev.preventDefault();
var xym = Jmol._jsGetXY(ev, canvas);
canvas.applet._applet.viewer.handleOldJvm10Event(org.jmol.api.Event.MOUSE_UP,xym[0],xym[1],org.jmol.api.Event.MOUSE_RIGHT,System.currentTimeMillis());
});
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
Phil,
Don't forget that you can left-click or tap on the JSmol logo to pull up
the context menu. No right-click required! :-)
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Wed, Jan 2, 2013 at 2:50 PM, Philip Bays pb
=HTML5
On Sun, Dec 23, 2012 at 11:08 PM, Robert Hanson hans...@stolaf.eduwrote:
OK! We have a popup menu in JavaScript. Thank you, Michael Evans!!! jQuery
UI to the rescue. All relevant code is in jsmol/j2s/java/coremenu.js
Check it out. http://chemapps.stolaf.edu/jmol/jsmol/test2.htm
Yep, the link below is still the latest. If you can see the radio button
group of colors, you know you're looking at the newest version. I've also
just implemented ImageIcon.
http://www.metallacycle.com/play/netmol/tests/popupMenu/popupMenu.html
Cheers, Mike
---
Michael Evans
Organic Chemistry
wrote:
What's the latest? I'd like to test this some tomorrow.
Sent from my stupid iPhone
On Dec 19, 2012, at 5:56 PM, Michael Evans evan...@illinois.edu wrote:
Guess I was feeling lazy when I wrote menuRemoveItem...it's an easy fix.
The array.splice(indexToStart, numberOfElements
Thanks, Bob. I got the sense objects would be the way to go. Working on
this this morning. Stay tuned!
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Wed, Dec 19, 2012 at 8:56 AM, Robert Hanson hans...@stolaf.edu wrote:
OK
would be
appreciated! :-)
Is this what you had in mind, Bob?
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Wed, Dec 19, 2012 at 9:10 AM, Michael Evans evan...@illinois.edu wrote:
Thanks, Bob. I got the sense objects
Great question, Phil...perhaps a left-click on the JSmol frank a la Jmol
would work?
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Wed, Dec 19, 2012 at 3:34 PM, Philip Bays pb...@saintmarys.edu wrote:
How does this work
way to implement
addItem.
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
--
LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial
get
a chance. Thanks!
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Sun, Dec 16, 2012 at 2:30 PM, Robert Hanson hans...@stolaf.edu wrote:
continuing this thread -- The only things missing from JSmol now, as far
as I
Exactly. Creating the nested unordered list is straightforward; perhaps
only the Menu component of jQuery UI will be necessary. Stay tuned.
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Mon, Dec 17, 2012 at 12:37 PM, Robert
Wow, I do notice a significant drop in loading speed (OS X 10.8, Chrome).
Thanks, Bob!
Cheers, Mike
---
Michael Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Sat, Dec 15, 2012 at 3:45 PM, Robert Hanson hans...@stolaf.edu wrote:
I have
Gotcha. Thanks, Bob.
Cheers, Mike
On Sep 20, 2012, at 10:53 PM, Robert Hanson hans...@stolaf.edu wrote:
Oh, THAT message
Hmm. I certainly use Jar files not in the current directory. Oh, I know.
There are two Info parts now:
Info.jarPath
Info.jarFile
just make sure you put the
Eric et al,
I would head for Mountain Lion. Java on Lion was a little spotty for me,
especially while using Safari. I don't know if Lion supports Safari 6 now,
but many of the slow downs and hangs I experienced in Lion with Safari 5
went away upon upgrading to Safari 6. Google Chrome was old
Martin,
You could use HTML5's local storage capabilities or server-side storage in
a session variable to do this, but I don't think there's a simple way to do
it using Jmol. You would use Jmol to set up a callback, however—probably a
scriptCallback. In the callback function, you could save the
Kumardeep,
I'm unsure of Jmol's ability to read PSE files, but if you are not married
to the superposition software, Superpose from the University of Alberta is
a nice alternative. The output of Superpose is a multi model PDB file,
which you can play with using Jmol's model command.
Cheers, Mike
A good idea from the standpoint of loading speed.
Cheers, Mike
---
Mike Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Thu, Jun 14, 2012 at 4:30 PM, Paul Pillot
paul.pil...@ac-orleans-tours.fr wrote:
Good idea !
Shall we bundle them in a
Martin—link...? I'd love to try this out.
Cheers, Mike
---
Mike Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Fri, May 11, 2012 at 10:26 AM, Martin Hediger ma@bluewin.ch wrote:
Dear Jmol Users
In our research group we have developed a
To piggyback on Martin's observation, Chrome does the same to me on OS X
10.7.3. It's been this way for a long time...since the beginning of 12.2,
IIRC. But it's been brought up a couple of times before, and I think we
concluded it's a browser issue?
Cheers, Mike
---
Mike Evans
Organic Chemistry
Hey all,
I'm having a little issue involving updates to script files on the web that
a loaded Jmol applet does not appear to see. The change is only noticed
by Jmol after I restart my web browser, as if the file is cached somehow.
There may be no way around this issue if it's the way the browser
Offend?! I think the rest of the jmol-users listserv just finds the whole
exchange hilarious. :-)
Cheers, Mike
---
Mike Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Fri, Feb 10, 2012 at 2:56 PM, Jeff Hansen jhan...@depauw.edu wrote:
I just
Hello all—I'm serving a ton of Jmol applets through a wiki that employs
SSLv3 encryption. These applets suddenly broke, giving a bad_record_mac
error, when we updated to SSLv3 on campus due to a bug (see below).
As a result of this bug, CITES has modified all of our web server
configurations to
and upcoming
releases of 12.3.12 and 12.2.12.
Sent from my stupid iphone
On Jan 12, 2012, at 11:40 PM, Michael Evans evan...@illinois.edu wrote:
Lords lasses of Jmol—just wanted to note an issue in 12.2.11 that I
think Dr. Gutow mentioned for 12.2.10 back in December...getProperty
image
Lords lasses of Jmol—just wanted to note an issue in 12.2.11 that I think
Dr. Gutow mentioned for 12.2.10 back in December...getProperty image and
the Javascript equivalent jmolGetPropertyAsString('image', 'all') cause the
applet to hang. Is there a workaround? Any idea where the solution might
Downloaded! Any chance browser applets could be set up to point to the
Android application if browser support for Java fails...? I'd be willing to
modify code I have for existing applets, but I'm not familiar with the
innards of Jmol (and especially the Android app).
Cheers, Mike
---
Mike Evans
Right on...this page seems to suggest that you need to associate URLs or
data types with your application in its AndroidManifest.xml file:
http://stackoverflow.com/questions/2958701/launch-custom-android-application-from-android-browser
Cheers, Mike
---
Mike Evans
Organic Chemistry Graduate
I run into the problem only on OS X 10.7...that may have something to do
with it.
Cheers, Mike
On Aug 23, 2011 1:24 PM, Jeff Hansen jhan...@depauw.edu wrote:
Whatever the problem is I don't think you can blame it on Safari. All
three links are fine for me in Safari 5.1, OS 10.6.8. No error
Sara—use the Jmol script command...
select sulfur and connected(sulfur);
You may be able to use the scriptCallback or messgeCallback of this command
to see what was selected; what I know works is to then use
show selected;
to spit out selected atoms. If you get anything back, you know
labels from the mol file is possible.
Rich
On Jul 31, 2011, at 2:11 PM, Michael Evans wrote:
Rich--although its 3d capabilities are not as good as jmol, marvin sketch
can do r/s assignment in 2d or 3d mol files. If that's all you're after,
check out marvin sketch.
http://chemaxon.com/marvin
Phil Jmol'ers—I can add to this discussion. I've upgraded to Lion, and have
experienced minimal trouble with the Java distribution recommended by Apple for
downloading. It's primary downside is bad integration with the browser; if
you're a Mac Chrome user you know the annoying Java Applet
Just discovered that dragging and dropping .jmols on the applet doesn't work
anymore in Lion. It opens a Finder window instead.
Cheers, Mike
Mike Evans
Organic Chemistry Graduate Student
Moore Group
University of Illinois, Urbana-Champaign
On Jul 22, 2011, at 12:14 PM, Michael Evans wrote
Lords and lasses of Jmol—I am interested in writing .jmol files (really,
folders containing their would-be contents) to a remote location on my
server using PHP. My question is about the precise specification of .jmol.
What is always included in the ZIP file, and how are the file's contents
:
They won't work if your data does not have occupancy information. Please
check the latest version, and/or send me the offending file so I can check
it out.
On Mon, Jun 20, 2011 at 5:53 PM, Michael Evans evan...@illinois.eduwrote:
Lords lasses of Jmol—in several versions of Jmol 12.0
://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12.zip for the fix.
I've also fixed that in Jmol 12.0, but that release will be later this week
or next week, probably.
ps: WebMO uses Jmol, by the way
2011/6/22 Michael Evans evan...@illinois.edu
I just refreshed my Jmol version, to no avail
J—the boundbox command might help:
http://chemapps.stolaf.edu/jmol/docs/#boundbox
Boundbox bounds the entire model by default, but it shouldn't be too
difficult to show only a particular side or to condense it. Try playing
around with boundbox CORNERS and boundbox TICKS to achieve the desired
Lords lasses of Jmol—in several versions of Jmol 12.0 (at least since
.34), the mo homo and mo lumo commands don't seem to be working. The
documentation seems to suggest they still should. Bug here? Could someone
test this to see if I'm the only one having this issue?
Cheers, Mike
--
Mike
Bob—this is *amazing*. I wrote an algorithm a while back that finds the
midpoint between the start and end of an arrow and essentially lifts it to
curve it by introducing a third intermediate point...I'm guessing that's how
this works too? These look better than mine, and I will switch when they
Bob—slick tool! Maybe JmolColorPickers or some other means to change the
color of MO lobes?
Cheers, Mike
On Thu, May 19, 2011 at 8:45 AM, Robert Hanson hans...@stolaf.edu wrote:
I've done a bit of work on my demo page for viewing molecular orbitals and
turned it into the Jmol Molecular
It's a little slow, but it seems to be working on my end (Snow Leopard OS X,
10.6) on FF beta 12, based on this page:
http://jmol.sourceforge.net/demo/trace/
Cheers, Mike
On Tue, Mar 8, 2011 at 7:35 PM, Philip Bays pb...@saintmarys.edu wrote:
Apple released a Java security update today. It
/%7Epbays/Stereochemistry.html
Particularly the cyclohexane options near the bottom of the list.
On Mar 8, 2011, at 9:49 PM, Michael Evans wrote:
It's a little slow, but it seems to be working on my end (Snow Leopard OS
X, 10.6) on FF beta 12, based on this page:
http://jmol.sourceforge.net
The difficulty is defining the atoms involved in the receptor...showing
bonds and ribbons in the entire protein is quite easy:
select protein; cartoon on;
The ligand will display initially as bonds and atoms. I suspect this isn't
what you want :-) Here's script for displaying bonds and atoms
Bob—a bit of a learning curve, but the jQuery UI Slider is phenomenal:
http://jqueryui.com/demos/slider/
Cheers, Mike
On Thu, Feb 10, 2011 at 10:00 AM, Robert Hanson hans...@stolaf.edu wrote:
I'll check out the slider business -- does anyone know of a simple slider
widget that works
Jan—here is a simple example:
http://chemapps.stolaf.edu/jmol/docs/examples-11/spacegroup.htm
Notice how an alert is thrown when you click on an atom. If you look at the
function in the source code, picking, that is called when an atom is
clicked, you'll see how the three arguments of the
Jan—you will want to play around with *set
PickCallbackhttp://chemapps.stolaf.edu/jmol/docs/#setcallback
*, which establishes a Javascript function that processes Jmol's output when
an atom or group of atoms is selected. To see what exactly Jmol returns,
check out the pickCallback section of this
Angel—there doesn't appear to be a way to connect atoms from different
models, at least according to the documentation. I have tried loading two
models, selecting one atom in each, and these commands:
connect (selected);
connect (selected and 1.1) (selected and 1.2);
Neither results in the
Bob—an official vote from from labmate who uses Jmol to display crystal
structures for this one. Any chance it could get placed in the next release
of 12.0?
Cheers, Mike
On Tue, Dec 7, 2010 at 8:58 AM, Robert Hanson hans...@stolaf.edu wrote:
Brian, yes, in fact I did notice that one. Odd that
Whew, thanks Bob! Miraculously this never caused a problem for me (that I
know of), even though I had 200+ students saving state files...
Cheers, Mike
On Tue, Dec 7, 2010 at 9:12 AM, Robert Hanson hans...@stolaf.edu wrote:
Jmol users,
If you have recently upgraded to any versions Jmol
Is it just me, or is set picking measure broken in 12.0.22? When I try to
measure a distance between two atoms, the measurement instantly disappears.
Measuring bond and dihedral angles works fine, however. What am I missing?
Cheers, Mike
--
Mike Evans
Organic Chemistry Graduate Student
Moore
Hey all—I would be interested in the write state function working with
combinations of PDB structures and inline models (built by importing from
JME or via model kit mode), for docking purposes. Given the recent work
that's been done on dragminimize and dragminimizemolecule, it seems like
a
Lords (and lasses?) of Jmol—is there a solid location that I can bookmark
containing the official Jmol change log? I think a problem I'm having is
related to a bug in my current version, and (go ahead, call me lazy) I'd
rather look it up to see if it's fixed in a later version than update Jmol
to
/Jmol/src/org/jmol/viewer/Jmol.properties?view=markup
Nico
On Mon, Nov 1, 2010 at 9:30 PM, Michael Evans evan...@illinois.eduwrote:
Lords (and lasses?) of Jmol—is there a solid location that I can bookmark
containing the official Jmol change log? I think a problem I'm having is
related to a bug
Xiao-Ping—there are *tons* of resources available!
The Jmol Website - http://jmol.sourceforge.net/
The Jmol Wiki - http://wiki.jmol.org/index.php/Main_Page
The Interactive Script Documentation - http://chemapps.stolaf.edu/jmol/docs/
If you can't find what you're looking for there, there's always
Bob—consider us interested. We teach a lesson on protein secondary
structures, and something like this could come in handy.
Cheers, Mike
On Thu, Sep 30, 2010 at 10:30 PM, Robert Hanson hans...@stolaf.edu wrote:
Jmol users interested in protein visualization:
Is there any interest in having
on the manuscript
for this... There's a PowerPoint presentation I gave on the subject at last
year's ACS meeting. See
http://chemapps.stolaf.edu/jmol/presentations/acs2009
On Mon, Sep 20, 2010 at 11:19 PM, Michael Evans evan...@illinois.eduwrote:
Bob + other Lords of Jmol—I'm looking for some
Wow, I had no idea Jmol could generate Ramachandran plots on the fly!
Remarkable!
On Mon, Sep 20, 2010 at 1:19 PM, Jeff Hansen jhan...@depauw.edu wrote:
I just checked this out. I sporadically observed this behavior of zooming
instead of rotating. It didn't always happen even after loading
Bob + other Lords of Jmol—I'm looking for some clarification of the plot
ramachandran r specification from the Interactive Script Docs; particularly
the definition of theta. It makes sense to me that theta is approximately
the sum of delta phi and delta psi. I get lost with two points:
- How
Hmm, might I suggest an orange-ish color, maybe something akin to #ffa500?
Orange is about the farthest color away from the colors that already exist
in that scheme right now. My second place vote goes to a deep navy blue.
Now for the real reason for my e-mail: I want to make sure I understand
Oh man, this number is only going to grow!
On Thu, Sep 2, 2010 at 2:28 PM, Robert Hanson hans...@stolaf.edu wrote:
Just noticed that there have been over 437,000 downloads of Jmol. Wow!
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
Lords of Jmol--I just had a quick versioning question. As Jmol 12 blossoms
into a number of versions after its initial release, which (if any) do you
advise for production usage? What's a tell-tale sign that I should switch
from, say, 12.0.x to 12.1.x?
Cheers, Mike
--
Mike Evans
Organic
Seconded. I thought this would be fixed back when the 200 ms issue was
fixed, but I'm still experiencing slow callbacks.
On Mon, Aug 16, 2010 at 8:50 AM, Alexander Rose alexander.r...@weirdbyte.de
wrote:
Hi,
does someone else experience painfully slow callbacks in firefox on mac
osx?
Sweet! Wonder what's different about 4.0?
On Mon, Aug 16, 2010 at 4:37 PM, Alexander Rose alexander.r...@weirdbyte.de
wrote:
Hi,
Am 16.08.2010 um 17:48 schrieb Philip Bays:
This seems to be another example of Mac Firefox (and I suspect Camino and
SeaMonkey) behaving differently. I would
Jmol team--I've had problems lately with JVXL files in Jmol. In Jmol 12.0.2,
I cannot get them to load at all. Has something changed with respect to the
file specification for JVXL files in Jmol 12, or could this be a bug? Here's
an example of a simple applet that is supposed to load a JVXL
JVXL file.
On Sun, Aug 15, 2010 at 11:11 AM, Michael Evans evan...@illinois.eduwrote:
Jmol team--I've had problems lately with JVXL files in Jmol. In Jmol
12.0.2, I cannot get them to load at all. Has something changed with respect
to the file specification for JVXL files in Jmol 12
FYI, I run into the same problem in the Firefox version of our Jmol
Interface, except using a JmolScript call in a pickCallback method.
On Fri, Jul 23, 2010 at 12:52 PM, Robert Hanson hans...@stolaf.edu wrote:
On Fri, Jul 23, 2010 at 9:18 AM, Paul Pillot
paul.pil...@ac-orleans-tours.fr
Jmolians--I'm having an interesting problem with Jmol applets in dynamically
loaded iframes.
https://wiki.cites.uiuc.edu/wiki/display/CHEM332Molmodac/expt
In the page linked above, the applet at the very bottom of the page is
displaying just fine--exactly the way I want it to, in the proper
Scratch that; it's not working as well as I thought. It loads the state
script in the uncloaked applet, oddly enough, only after the page has been
re-loaded.
On Thu, Jul 22, 2010 at 11:20 AM, Michael Evans evan...@illinois.eduwrote:
Jmolians--I'm having an interesting problem with Jmol applets
for the + and -
cases and update the color for each one.
Let me know what you come up with.
Jonathan
On Jul 20, 2010, at 5:59 AM, jmol-users-requ...@lists.sourceforge.net
wrote:
Date: Mon, 19 Jul 2010 16:39:39 -0500
From: Michael Evans evan...@illinois.edu
Subject: [Jmol-users] Using multiple
Is there a way to use input from two different color pickers in a single
Jmol command? I'm thinking along the lines of isosurface and MO. A way to
set the positive and negative colors for these commands independently would
obviate the need for this feature (if it doesn't exist already), but it
Lords of Jmol: I came across an interesting question the other day. A
student wants to use Gaussian .log output to build an animation of the
geometry minimization process from Gaussian's point of view, with each frame
corresponding to a different geometry until the optimized structure is
reached.
Bob--this is truly amazing! Our students just last semester were asking
about docking small molecules to proteins in Jmol...this'll be interesting
to explore with existing PDB structures...wonder if Jmol agrees with the
crystal structures from an energetic and conformational point of view?
That'd
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