[Jmol-users] JSmol via liveweb in Powerpoint?

Can anyone advise if JSmol will run via the liveweb addin in Powerpoint? I've located some similar questions like this before in the archive but was unable to locate an answer describing how to do it. I have a page that will run locally in a browser without issue. However, when I point to it

Re: [Jmol-users] simple question from a novice eager to learn

@lists.sourceforge.net Subject: Re: [Jmol-users] simple question from a novice eager to learn Stephen, you are almost there -- just one issue: On Tue, Aug 11, 2015 at 2:59 PM, Stephen Hillier mailto:stephen.hill...@hutton.ac.uk>> wrote: $(document).ready(function() {

[Jmol-users] simple question from a novice eager to learn

Hi, I haven’t used Jmol for a while and I’m struggling to figure out how to get some very simple things working using the new JSmol I have been trying to understand how to get a button or a check box to appear so I have tried to adapt some of the code in one of the examples in the download “su

Re: [Jmol-users] More on putJmolDiv

have some more questions soon! sincerely, steve Dr Stephen Hillier The James Hutton Institute Craigiebuckler ABERDEEN AB15 8QH UK Direct +44 (0) 1224 395336 Main +44 (0) 1224 395000 Fax. +44 (0) 1224 395039 e-mail: stephen.hill...@hutton.ac.uk RESEARCH www.hutton.ac.uk/staff/steve-hi

Re: [Jmol-users] More on putJmolDiv

Bob, I think that sounds more complicated that what I am trying to do. Basically, I have the applet runing in a div, and I'm not sure how I now associate buttons, tick boxes etc with the applet now that it has opened inside the div. My attempt to just put some code on the same page, seemed to

Re: [Jmol-users] putJmolDiv

Angel, thank you, I think I understand, and your suggested solution sounds logical. I assume both functions in pop_Jmol.js should be modified? function putJmolDiv(molNr, molName, molFileName) { var imageFileName = molFileName.substring(0,molFileName.lastIndexOf(".")) + ".jpg"

[Jmol-users] putJmolDiv

Can anyone help with how to use putmolDiv? I have managed to use it to load structure files, to replace a static image, but tried to repalce the structure file with a script file and can't get that to work? many thanks, steve This email

Re: [Jmol-users] Firefox and Jmol?

Angel, looks like this was the problem, I haven'tdone exactly as you suggested (as I'm a beginer with html as well) but simply changed the panel dimension from a percentage to pixels, and now the model displays in all the browers I have tried. I do have a copy of your guide 'How to use Jmol t

Re: [Jmol-users] Firefox and Jmol?

Angel, many thanks for the help, I will give this a try and report back. steve -Original Message- From: Angel Herráez [mailto:angel.herr...@uah.es] Sent: 15 October 2011 22:10 To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Firefox and Jmol? I forgot to explain... The p

Re: [Jmol-users] Firefox and Jmol?

Bob, Angel, et al. the page I was trying out is here: http://www.claysandminerals.com/materials/halloysite Platform is PC running Win XP Firefox is 3.6.23 Jmol 12.2.0 I've never tried to put a model in a web page before so it could easily be a basic mistake on my part. steve -Original Messag

[Jmol-users] Firefox and Jmol?

Dear All, I am trying for the first time to use Jmol in a web page. Everything works fine in IE, and Chrome, but for some reason the applet does not display with Firefox? I can see some buttons, check boxes etc that I have also included in the web page but no applet panel. I've also noticed in

Re: [Jmol-users] sets of planes

21-Feb-11 2:39 PM >>> Try draw intersection BOUNDBOX instead of unitcell. It won't be quite as pretty, but it might be ok. On Mon, Feb 21, 2011 at 5:28 AM, Stephen Hillier wrote: Bob, many thanks indeed for help with this, I haven't attempted to define functions

Re: [Jmol-users] sets of planes

phkl" + i + " intersection unitcell plane " + hkl(1.0*h/i, 1.0*k/i, 1.0*l/i) + " color " + colors[i % colors.length + 1] + " " + params } script inline @s } //load quartz.cif {1 1 1} drawHkl 1 2 3 or drawHkl 2 2 2 "mesh nofill" for example. Bob On

[Jmol-users] sets of planes

Dear All, I have learned how to display a in plane in JMOL based on millier indices eg 111, but I am unsure about how I would go further and display a whole set of similar planes. I expect it need some kind of loop with the plane coordinates as a variable? If someone could point me in the r

Re: [Jmol-users] SELECT WITHIN

Figured it out thanks, hkl should be in quotation marks e.g. select within(3.0, "hkl", {0 0 1}) steve >>> "Stephen Hillier" 01-Jan-10 10:05 PM >>> I also have question about selecting after loading a range of unit cells from a CIF fil

[Jmol-users] SELECT WITHIN

I also have question about selecting after loading a range of unit cells from a CIF file I'm trying to figure out how to use 'select within..' to select some atoms near a plane e.g: but I get an error message and can't figure out what I'm doing wrong: $ load "" {3 3 1} packed $ select within(3

Re: [Jmol-users] loading multiple unit cells and CIF files

lease just reiterate for me: -- version of Jmol you are using -- attach file contents, please -- perhaps send a JPG of what you think is wrong On Fri, Jan 30, 2009 at 8:15 AM, Stephen Hillier wrote: > Since my last reply I have tried loading some other CIf files for the > mineral Dickite

Re: [Jmol-users] loading multiple unit cells and CIF files

Angel, thank you this is useful for me to understand how to load mutiple unit cells, but as you will see from my last post I think there is something else that has confused me as well, because different CIF files for the same mineral from reliable sources all appear to produce quite different r

Re: [Jmol-users] loading multiple unit cells and CIF files

ure it was acceptable practice to attach them to a mail to the list. sincerely, steve >>> "Stephen Hillier" 30-Jan-09 9:57 am >>> Paul, thank you for the description of the display command, I assumed there was some short hand way of displaying the range of cells,

Re: [Jmol-users] loading multiple unit cells and CIF files

0 H2 0.30700 0.26000 0.34600 0.02200 H3 0.25000 0.99000 0.30500 0.01800 H4 0.27000 0.58800 0.34200 0.02600 >>> Robert Hanson 29-Jan-09 11:17 pm >>> please send that file, and perhaps a description of what you would expect to see instead of what you see.

Re: [Jmol-users] loading multiple unit cells and CIF files

unitcells. When you load 3x3x3 unitcells, only the central one is whole. If you want to display only this unitcell, use the command : display cell={2 2 2} So if you want to see 3x3x3 whole unitcells, you should load 5x5x5 unitcells and only display the 27 central ones... Paul Le 29 janv. 09

[Jmol-users] loading multiple unit cells and CIF files

A question from a novice, trying to learn to use Jmol. I have been trying to load CIF files into Jmol and display ranges of unit cells, I don't currently understand all the options for doing this but I also get some results that appear to me to be a little strange? I have tried loading examples

Re: [Jmol-users] Atoms at polyhedra vertices

Angel, Yes it seems to be extrapolating polyhedra- completing those that extend beyond the single unit cell displayed. But I'm confused because some commands e.g. 'select all' indicate that thousands of atoms are present, indeed followed by 'hide' the thousands become visible filing the entire

[Jmol-users] Atoms at polyhedra vertices

I'm using the symmetry > reload plus polyhedra - a command available in the Jmol application pop up menu Some polyhedra that are drawn have no atoms displayed at their vertices. I would like to display those atoms, but can't find any examples of a script command to do this? Any help would be

[Jmol-users] what are the different applet files?

Hi, could someone tell me what the all the different applet files are? And why a signed and an unsigned set? I'm guessing maybe they are if you only need some limited functionallity? thanks for the patience and time to answer, much appreciated, steve -- Please note that the views ex

Re: [Jmol-users] writing an xyz file from the Jmol application

ons. The current option list looks like this: script ERROR: write what? COORDS|HISTORY|IMAGE|ISOSURFACE|MO|STATE|VAR x CLIPBOARD or JPG|JPG64|PNG|PPM|SPT|JVXL|XYZ|MOL|PDB "filename" Stephen Hillier wrote: >Bob, > >I've tried these exactly - with my own file na

Re: [Jmol-users] writing an xyz file from the Jmol application

27;s a misprint/bug. You do have to specify the type of write you want: write coord "filename.xyz" or, if the filename is not explicit: write XYZ "filename" I see now that there is a typo in the documentation or a bug in Jmol in that "coord" not "coords" is necessary

[Jmol-users] writing an xyz file from the Jmol application

Hi, I am trying to use the command write coords "filename" with the Jmol application to save an *.xyz file , I have also tried write "filename.xyz" I am trying to create and save a file that I can then load into power point as per instructions at: http://dcwww.camp.dtu.dk/~strabo/jmolinfo.

[Jmol-users] Thanks for the help for a beginner

Hi, just a quick note to thank everyone who sent me some help to get started with Jmol. I have plenty to get me going now, and I think I'm well on the way to understanding some of the basics. thanks to you all. steve -- Please note that the views expressed in this e-mail are those of the se

[Jmol-users] Help for a complete beginner

Hi, I am trying to learn how to use the Jmol standalone application to display mineral structures. I have downloaded several structures form online mineral structure databases and can load them into Jmol succesfully, but what I don't understand is how to start adding/replicating atoms to start fi