Re: [Jmol-users] colouring isosurface of specific residues?

On Wed, Nov 10, 2010 at 5:47 AM, Steven Platt wrote: Hi, I'm using the Application (12.0.19) to generate a few figures and cannot seem to see, in the online scripting documentation, how to assign colour to the isosurface of specific residues. I have a few groups defined and can colou

[Jmol-users] colouring isosurface of specific residues?

t the isosurface seems to be all or nothing. Can anyone point me in the right direction? Thanks Steve Dr Steven Platt Bioinformatician Applied Laboratory- and Bio Informatics Health Protection Agency Centre for Infections 61 Colindale Avenue London NW9 5EQ www.hpa.org.uk/bioinform

Re: [Jmol-users] good idea?

Although only an irregular Jmol user, I think that this is an excellent addition. Possibly best implemented as a toggleable (real word?!) option to prevent constant error throwing on misuse. Steve Dr Steven Platt Statistics, Modelling and Bioinformatics Health Protection Agency Centre for

Re: [Jmol-users] unloading molecule

Zeyar, I've just been doing something very similar to this. The script command 'zap' deletes a molecule from the view. The way to quit (kill!) Jmol uses commands outside of Jmol itself and depends which platform you're on. For Windows XP you can use TASKKILL and the name of the Jmol window, whic

Re: [Jmol-users] how to get application to wait for useruseratomselection?

none set picking measure angle set pickCallback "jmolscript:checkAngle" This way you have the three atoms in a way that you can do anything with them you want, still within Jmol. Bob On Fri, Oct 10, 2008 at 6:15 AM, Rolf Huehne <[EMAIL PROTECTED]> wrote: Steven Platt wrote: >

Re: [Jmol-users] how to get application to wait for useruser atomselection?

@lists.sourceforge.net Subject: Re: [Jmol-users] how to get application to wait for useruser atomselection? Steven Platt wrote: > Thanks for the tips Bob, however this doesn't appear to work with the application (v11.6) and the console complains about the { } in the function. I guess that this would work

Re: [Jmol-users] how to get application to wait for user user atomselection?

uot; b=" + b + " c=" + c + " d=" + d + " e=" + e) } and see what you can use there. Something like that. Bob On Thu, Oct 9, 2008 at 12:37 PM, Rolf Huehne <[EMAIL PROTECTED]> wrote: Steven Platt wrote: > Hi Everyone, > > I'm trying to get the

[Jmol-users] how to get application to wait for user user atom selection?

= _pickInfo; delay 2; end while message @x; Running this loads the molecule but doesn't allow me to select an atom, let alone report anything to the console. How can I script the application (v11.4.00) to wait for an atom to be picked before continuing with the script? Any advice appreci

Re: [Jmol-users] How long to load Jmol?

Hi Bob, If you're still collecting these here are my times (WinXP, IE6)... Steve -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Bob Hanson Sent: Saturday,28 April 2007 04:51 To: jmol-users@lists.sourceforge.net Subject: [Jmol-users] How long to load Jmo

Re: [Jmol-users] Error: Object expected [SOLVED]

CTED] On Behalf Of Steven Platt Sent: Tuesday,12 December 2006 15:07 To: jmol-users@lists.sourceforge.net Subject: [Jmol-users] Error: Object expected Hi there, I've got a PERL script in /cgi-bin/steve/ which uses jmol and it's throwing errors I can't diagnose when the page is re

[Jmol-users] Error: Object expected

Hi there, I've got a PERL script in /cgi-bin/steve/ which uses jmol and it's throwing errors I can't diagnose when the page is rendered... specifically: Line: 34, 83, 123 Char: 6 Error: Object Expected Code: 0 Nothing is displayed I'm rendering several images in a single page, and lines 34