I am assuming you are interested in just using the Jmol application,
and not trying to use it as an applet in a web page. In this case,
when you download Jmol, simply double-click on the Jmol.jar file in
the folder that OSX creates. You can also drag this to your
Applications folder if you
Is it possible to set the Jmol applet background color to be
transparent?
-
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job eas
On Jul 24, 2006, at 3:37 PM, Miguel wrote:
> I suggest that if you want to add this to Jmol 10 that it may be
> easier to
> add a separate 'interpolate' step that actually calculates and
> stores the
> intermediate positions of the atoms.
Would you ming elaborating a bit on this?
-Eric
-
By interpolation between frames, I mean: an option, in the animation
menu, to create a number of "transition" frames between two frames in
an animation to make it look smoother. This is how it was described
to me:
"I don't know how it work under the hood, but in the jmol 9 that I
use, when
Does 10.x support interpolation between frames in animation? I have
heard that Jmol 9 supported this, but I can't seem to find
information about it anywhere in 10.x. Was this feature discontinued?
-
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I should clarify that I am referring to 10.x and am aware of the fact
that you can give Jmol script commands to execute in the jmolApplet()
function call. I'm just looking for a general way to tell when the
applet is done loading and ready for input.
On Jul 16, 2006, at 4:41 PM, eric
Is there a way to tell when the Jmol applet has finished loading,
ideally with javascript? By finished loading, I mean that the loading
splash screen has disappeared and Jmol responds to script commands.
-Eric
-
Using To
i'm doing this combination o javascript and java to try to get the
jmol Viewer into my other applet.
javascript:
var bufferApplet = document.applets["JmolBuffer1"];
bufferApplet.setJmolViewer(_jmolGetApplet().getProperty
('jmolViewer'));
java:
public void setJmolViewer(Object v)
System.out.println("" + e);
> }
>
> where "appletWrapper" is the browser embedding that other applet.
>
> I haven't experimented with this much; someone else probably knows
> better how to do this.
>
> Bob
>
> eric capps wrote:
is it possible for jmol to be embedded in a page with another applet?
how would this be done, and how would the second applet go about
accessing jmol's public methods?
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technolog
i'm passing some commands to jmol using setTimeout() in _javascript_, and i'm trying to insure that the current job is done before moving on to the next one, to prevent the stack from piling up. the following bit of code SEEMS to have improved things somewhat:
var done = null;
that's kind of weird. could it be your os/browser? .jar's are
compressed i believe so maybe it's.. arguing with you. what's your
setup?
On 6/6/06, Steven R. Spilatro <[EMAIL PROTECTED]> wrote:
> I'm a rookie to jmol so your patience is appreciated. I want to take
> advantage of new functions I se
very unusual. i will test this next time i'm on a linux machine.
On 6/6/06, Michal Bozon <[EMAIL PROTECTED]> wrote:
> I have another problem with Jmol in firefox on linux. The
> http://theory.cm.utexas.edu/~eruhk/vis.html mentioned previously, does
> not crash for me, but the (radio)buttons do not
here's one: suppose i have a model that's part of a larger system
which interlocks pieces of it together. think tiling: i have model 1,
and i want to make:
1 1
1 1
would that be possible natively within jmol? or am i going to have to
script something.
___
thanks. i think this may be a mac-only firefox issue.On 6/2/06, Rolf Huehne <[EMAIL PROTECTED]> wrote:
I tested it with the following configurations and it worked well, nocrashes:
SuSE Linux 9.3: Java 1.4.2_11 Firefox 1.0.8WinXP SP2: Java 1.5.0 Firefox 1.5.0.3 Mozilla 1.7.13 IE 6.0.2900Regard
first of all, i'm sorry if this message has already gone through, i
was having trouble w/ the list earlier today and i think that this was
probably bounced.
this may be mostly of interest to bob, unless everyone's already
figured it out, in which case it's probably mostly of interest to me.
i've
is there a way to disable the right-click context menu in the jmol
applet, other than simply disabling right clicks for the page it's
embedded in?
-eruhk
---
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Fully trained
haha! wow, sorry. gmail collapses all of that automatically so it
didn't even occur to me. i'll shorten things in the future.
On 5/27/06, Sebastian Lisken <[EMAIL PROTECTED]> wrote:
Bob, and others, when you reply to a message on the list, could you
*please* remember to delete the part of the qu
this message relates to the experimental prototype "Jmol 10.x" not
the public release Jmol 10.2. See
http://www.stolaf.edu/people/hansonr/jmol/test/proto/new.htm for details.]
eric capps wrote:
> bob,
>
> so if you have 1 model whose atoms you continually change with 1000
>
at, but in this case, it's
an experiment. That's the only reliable tag you have.
It's also the number that's displayed if you use
select *;label %D
It's called the atom "index" number.
Bob
eric capps wrote:
> wow, yeah. so does move, save, move, restore
nk there's something wrong with the data for the "home" position.
If you first move the model around and THEN save, move some more,
save, they all work, right?
Bob
eric capps wrote:
> bob,
>
> may be my environment but this isn't quite working for me. the restore
>
ple/hansonr/jmol/test/proto/Jmol-new.js
http://www.stolaf.edu/people/hansonr/jmol/test/proto/new.htm
jmolRestoreOrientationDelayed(id,delay,targetSuffix)
-- id should correspond to same for jmolSaveOrientation()
-- delay defaults to 1 second
-- can be set to anything
-- targetSuffix optional
Bob
targetSuffix optional
Bob
eric capps wrote:
> bob,
>
> can you think of a way to do a restore orientation w/out the delay?
> since i'm trying to use it in place of the built in animation
> capability, i want it to be able to snap back in position immediately.
>
> O
z
# Just a few times for random changes in atom placement
# Please let me know if this works
#
at
http://www.stolaf.edu/people/hansonr/jmol/test/proto/new.htm
Bob
eric capps wrote:
>
> if you have any more advice i'd love to hear it, and when i run into my
> next wall i
bob,
can you think of a way to do a restore orientation w/out the delay?
since i'm trying to use it in place of the built in animation
capability, i want it to be able to snap back in position immediately.
On 5/23/06, Bob Hanson <[EMAIL PROTECTED]> wrote:
Eric Capps wrote:
&
xt wall i'll be right back here.btw, if you're curious, this is for a project at http://eon.cm.utexas.edu
-ericOn 5/23/06, Bob Hanson <[EMAIL PROTECTED]> wrote:
Eric Capps wrote:> bob,>> i believe i have the most recent version of jmol, but my jmol.js> doesn't have the
u are on frame X any
time. The JavaScript would then call to load frame X+3 with file Y+3, and the
animation could just run and run, and the user could twiddle with the mouse all
he/she wants, and it would just be a gas. They could start, stop, rewind, etc.
You would just have to carefully sync th
i'm trying to create a very large animation. it maps the movement of
around 1000 atoms, over potentially hundreds of thousands of steps,
with as many as 1 unique states (there are situations where a
series of steps repeat themselves many times). i am new to jmol, and
from the demonstrations it
i'm just playing around w/ jmol for the first time. i have copied the
simple example at http://jmol.sourceforge.net/jslibrary/ as well as
the caffeine.xyz it references to my hard drive on my mac, and changed
the path information to my local copy of jmol. however, the page is
blank when i open it
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