Hi Angel,
Thank you for your suggestion. Two snapshots are enclosed for your review.
Please click http://bdb4.ucsd.edu/bind/surflex.jsp?PDB=1GSI&HET=TMP
Please click
http://bdb4.ucsd.edu/bind/jmol_pdb.jsp?pdbid=1GSI&monomerid=50332929&polymerid=p5494&seq=100&title=pound34Thymidylate%20kin
Sorry, Tiqing, but I do not see what the problem is. The proteins in those two
pages
>
http://bdb4.ucsd.edu/bind/jmol_pdb.jsp?pdbid=1GSI&monomerid=50332929
&polymerid=p5494&seq=100&title=pound34Thymidylate%20kinasepou
nd34%20AND%20pound34CHEMBL394429pound34
and
> http://bdb4.ucsd.edu/bind/
=100&title=pound34Thymidylate%20kinasepound34%20AND%20pound34CHEMBL394429pound34
http://bdb4.ucsd.edu/bind/surflex.jsp?PDB=1GSI&HET=TMP
---
All the best to you,
Tiqing Liu, Ph. D.
Message: 1
Date: Thu, 22 Aug 2013 20:22:55 +0200
From: Angel Herr?ez
Subject: Re: [Jmol-users]
Not sure if / how this would affect the protein, but I think instead of using
"select model=3;"
you need to use
"select 3.0;"
or
"select file=3;"
(those will select all models in the 3rd file, which seems to be your intention
since file nr.3 has 4 models)
-
Hello Liu
Can you be more specific? That would help.
By "multiple layer", do you mean several models (frames) are loaded
together? Or something else?
> http://bdb4.ucsd.edu/bind/surflex.jsp?PDB=1GSI&HET=TMP does not
behave where not all the atoms and bonds in protein are cartooned.
Which pa
Dear Group,
I am a developer in www.bindingdb.org using Jmol for some displays, like
http://bdb4.ucsd.edu/bind/jmol_pdb.jsp?pdbid=1MRS&monomerid=50132286&polymerid=p5494&seq=100&title=pound34Thymidylate%20kinasepound34%20AND%20pound34CHEBI:270373pound34,
and multiple layers http://bdb4.ucs
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