Re: [Jmol-users] Loading several models at once

o display one model at a time. > >Is it easily fixable? > > >Best, >Eran > > >From: Bob Hanson <[EMAIL PROTECTED]> >Subject: Re: [Jmol-users] Loading several models at once >To: jmol-users@lists.sourceforge.net >Message-ID: <[EMAIL PROTECTED]> >Con

Re: [Jmol-users] Loading several models at once

Hi Bob, Sounds like 'load TRAJECTORY "filename"' would help me. Actually it might be perfect as I only need to display one model at a time. Is it easily fixable? Best, Eran From: Bob Hanson <[EMAIL PROTECTED]> Subject: Re: [Jmol-users] Loading several mod

Re: [Jmol-users] Loading several models at once

Eran, load TRAJECTORY "filename" is supposed to help you here. But it is currently broken, I see. What this does is save only the atom positions for each model, not the whole scheme. The models must have the same number of atoms; the restriction then is that you can only display one model at a

Re: [Jmol-users] Loading several models at once

Eran, you may be interested to see http://firstglance.jmol.org/bigpdb.htm There I concluded that 99.9% of published PDB files will fit in the default java memory and display in Jmol. There may be problems with deallocating memory when you load multiple PDB files in the same browser session, esp

Re: [Jmol-users] Loading several models at once

I've done a quick test and this seems to work (WinXPsp2): Control Panel > Java icon (opens Java Control Panel) > "Java" tab > "Applet run-time configuration" > "Show" button > on row "JRE" (latest version if there are several), click on the textbox > under "Parameters" and type: -Xmx###m wher

Re: [Jmol-users] Loading several models at once

Eran, the Wiki has info on command line options for the app: http://wiki.jmol.org:81/index.php/Jmol_Application#Giving_Jmol_more_me mory_to_work_with Not for the applet, but maybe the description for configuring interface language in the applet http://wiki.jmol.org:81/index.php/User:AngelHerraez#J

Re: [Jmol-users] Loading several models at once

On Dec 12, 2007, at 10:43 AM, Eran Hodis wrote: > > Is this a memory problem and if so, what is the method for allocating > more memory to a Jmol applet? -- I remember reading about this once > on the mailing list but couldn't find it when searching. > you can use runtime parameters to control memo

[Jmol-users] Loading several models at once

Hi All, I'm trying to load a multimodel PDB file into Jmol that has 30 models with about 5000 atoms each. It's not an issue of file format because another similar multimodel PDB file with 30 models but only 250 atoms each works file. Is this a memory problem and if so, what is the method for