I don't think it has anything to do with that, but I won't have time to
check on that until late next week, unfortunately.
On Sat, Nov 9, 2013 at 6:01 AM, Otis Rothenberger wrote:
> Bob,
>
> I assume this is the same problem I'm seeing in a number of situations,
> primarily with callbacks, bind
Bob,
I assume this is the same problem I'm seeing in a number of situations,
primarily with callbacks, bindings, and partial charge calculation. I may also
see it with minimization. I'm not sure. The problems are all random.
I don't see the problems when I use modelkitmode from the Jmol modelki
Understand that that is just a "slow-mode" test that will revert to not
working before the weekend is over when I take out those comments. We do
not have a solution to this. I might be able to report it, but I think we
just have to hope that this gets fixed in the next Safari release. I cannot
imag
Right. It now works:-)
On Nov 8, 2013, at 7:56 PM, Robert Hanson wrote:
> Well, good news and bad news. The good news is that I can identify the
> situation that causes this bug. The bad news is that it is (specifically, I
> think) a Safari 7.0 bug totally out of our control. Something VERY
Well, good news and bad news. The good news is that I can identify the
situation that causes this bug. The bad news is that it is (specifically, I
think) a Safari 7.0 bug totally out of our control. Something VERY odd is
happening in this system that does depend upon timing. So, for example,
just a
Sorry that just got to you today. I sent it several days ago and it was held
up by the administrator, probably because of the included error messages.
Phil
On Nov 8, 2013, at 10:40 AM, Robert Hanson wrote:
> planning on getting to this today
>
planning on getting to this today
--
November Webinars for C, C++, Fortran Developers
Accelerate application performance with scalable programming models. Explore
techniques for threading, error checking, porting, and tunin
When you try to open the link without the console on, nothing happens. if you
then open the error console, you see the following:
[Error] Failed to load resource: the server responded with a status of 503
(Service Unavailable) (get-js, line 0)
[Error] java.lang.NullPointerException
(ano
just hang on on this one; you won't figure it out
On Wed, Nov 6, 2013 at 8:48 AM, Philip Bays wrote:
> On looking at the console more closely, the item that is colored red in
> the console seems to be “get-js” which shows a status of 503. Not sure
> what that means. However, repeated l
Bob,
I put 13.3.9_2013.11.06 on:
http://chemistry.illinoisstate.edu/osrothen/JSmolVMK.htm
To reiterate, if you get it loaded by using the Safari Error Console trick,
then the following problem can be observed:
You can see one of the problems, again on Mavericks Safari. Click the Edit
button a
First check -- this has nothing to do with the console. It's a null
pointer exception within Jmol.
On Wed, Nov 6, 2013 at 8:48 AM, Philip Bays wrote:
> On looking at the console more closely, the item that is colored red in
> the console seems to be “get-js” which shows a status of 503. Not s
Bob,
I'm running 2013.11.05. I'll change it after I send this.
Currently, you can see one of the problems, again on Mavericks Safari. Click
the Edit button and do an H click replacement with C. It replaces the H with C,
then freezes. It's choking on a message call back that does some housekeepi
On looking at the console more closely, the item that is colored red in the
console seems to be “get-js” which shows a status of 503. Not sure what that
means. However, repeated loading of the page shows the timing on that item
varying from 55 ms to over 2 sec.
On Nov 6, 2013, at 11:20 AM,
Other links work just fine, though, right? Just the center ones I listed
are problematic? Or the applet does not work at all?
On Wed, Nov 6, 2013 at 8:18 AM, Philip Bays wrote:
> I observe the same by turning on the “Show Error Console” . The page then
> loads.
>
>
> On Nov 6, 2013, at 11:08 A
But straight-up fresh-start Maverick Safari just never shows the JSapp at
all?
And, when the console is opened, there are no reports there?
On Wed, Nov 6, 2013 at 8:21 AM, Philip Bays wrote:
> Once the applet is loaded (with the error console on) things seem to work,
> though rather clunky.
Once the applet is loaded (with the error console on) things seem to work,
though rather clunky.
On Nov 6, 2013, at 11:20 AM, Robert Hanson wrote:
> Other links work just fine, though, right? Just the center ones I listed are
> problematic? Or the applet does not work at all?
>
>
> On Wed,
How inconvenient! A bug that requires that bug reporting is off!
On Wed, Nov 6, 2013 at 8:17 AM, Philip Bays wrote:
> In the Safari develop menu item (across the top) which you need to turn on
> in preferences, there is an item called "Show Error Console”.
>
>
> On Nov 6, 2013, at 11:14 AM, Rob
I observe the same by turning on the “Show Error Console” . The page then
loads.
On Nov 6, 2013, at 11:08 AM, Otis Rothenberger wrote:
> Dang!
>
> When I put the JavaScript console up, it loads on Maverick Safari.
>
> Timing...
>
> Otis
> --
> Otis Rothenberger
> o...@chemagic.com
> http:/
In the Safari develop menu item (across the top) which you need to turn on in
preferences, there is an item called "Show Error Console”.
On Nov 6, 2013, at 11:14 AM, Robert Hanson wrote:
> When you say "error console", what are you talking about exactly?
>
>
> On Wed, Nov 6, 2013 at 8:12 AM,
When you say "error console", what are you talking about exactly?
On Wed, Nov 6, 2013 at 8:12 AM, Philip Bays wrote:
> Bob:
> On both of these links, the jmol window does not open unless I have the
> error console turned on. When it is on, the center column links seem to
> work.
>
>
> On Nov
Just for reference, I would like comments specifically based on
http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.06.zip
Anything older than that will just confuse the issue. Obviously something
broke
Bob
On Wed, Nov 6, 2013 at 8:08 AM, Otis Rothenberger wrote:
> Dang!
>
> When I p
Bob:
On both of these links, the jmol window does not open unless I have the error
console turned on. When it is on, the center column links seem to work.
On Nov 6, 2013, at 10:44 AM, Robert Hanson wrote:
> There is one and only one thread. However, there are several tricks that I
> use now
Dang!
When I put the JavaScript console up, it loads on Maverick Safari.
Timing...
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 6, 2013, at 11:00 AM, Otis Rothenberger wrote:
> Bob,
>
> OK, you've been right on this point in the past (100% right!), but remember
Bob,
OK, you've been right on this point in the past (100% right!), but remember
these are Mavericks Safari problems - not Chrome and FF. I'm not sure about
MSIE.
To work on this, I've been bouncing around versions of JSmol. Right now the
version that you put up yesterday does not load on Mave
There is one and only one thread. However, there are several tricks that I
use now to "fake" threads -- script interruptions that save their exact
state and restart when a thread is complete. There are several tests at my
site that use "threads". I would like you to try and report back on them.
Th
Otis, don't try to solve this problem yourself. I have access to plenty of
Macs. Point me to the simplest pages you can conjure up that cause the
problem and let me fix it. No rogue hacks, please!
This one sounds like a bug in the asynchronous scripting components of Jmol
within the Java-derived c
It works on iOS devices, but not OS.
J. Philip Bays
Emeritus Professor of Chemistry
Saint Mary's College
Notre Dame, IN 46556
Sent from my iPhone
On Nov 6, 2013, at 9:07 AM, Robert Hanson wrote:
still a problem? I just tested it with my 1st-gen iPad with Safari and it
was fine.
On Mon, Nov
Phil,
I noticed this console behavior with several of my scripting problems. With the
console open, the problems got better. This sounds like timing issues - i.e.
the console feed is letting things catch up.
Bob, does calculate partialCharge run in a separate thread?
Otis
--
Otis Rothenberge
Bob and Phil,
It does not work for me either in Safari for Mavericks, but know this: Safari
for Mavericks (iPad aside) is a JSmol disaster. I'm literally rewriting our
whole virtual model kit to deal with the quirks. I don't think these are JSmol
problems or bugs. This version of Safari is just
Bob:
Sorry that my first message is not clear. Safari on iOS devices works fine.
it is Safari on my laptop and desktop that has the problem. But it is
consistently solved by opening, and keeping open, the error console??
On Nov 6, 2013, at 9:07 AM, Robert Hanson wrote:
> still a problem?
still a problem? I just tested it with my 1st-gen iPad with Safari and it
was fine.
On Mon, Nov 4, 2013 at 11:32 AM, Philip Bays wrote:
> I have been out of the loop for a while taking care of my wife who has a
> broken and repaired knee cap. I knew we ought to pay off those gambling
> debts:
I have been out of the loop for a while taking care of my wife who has a broken
and repaired knee cap. I knew we ought to pay off those gambling debts:-)
I have been looking today at the Super Simple JSmol page
(http://chemapps.stolaf.edu/jmol/jsmol/simpleOpt.htm).
It works fine in Mavericks
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