Many thanks for everyone's help with this. It is resolved now and your
suggestions sent me down the right path.
>From Blue Waters support:
Static linking is and has been the default on BW when compiling
applications for the CPUs. For the GPUs, when you load the cudatoolkit
module, it sets XTPE_LIN
Hi John,
Here is the config.log. Many thanks for the suggestions--I will look into
those.
Thanks,
Jim
On Wed, Aug 21, 2013 at 2:03 PM, John Peterson wrote:
>
>
> On Wed, Aug 21, 2013 at 12:59 PM, John Peterson wrote:
>
>>
>>
>>
>> On Wed, Aug 21, 2013 at 12:56 PM, John Peterson
>> wrote:
>> >
On Wed, Aug 21, 2013 at 12:59 PM, John Peterson wrote:
>
>
>
> On Wed, Aug 21, 2013 at 12:56 PM, John Peterson
> wrote:
> >
> >
> >
> >
> > On Wed, Aug 21, 2013 at 11:42 AM, Jim Fonseca
> wrote:
> >>
> >> Hi John,
> >> From make V=1
> >>
> >>
> > Thanks.
> >
> > So I guess my next question is: w
On Wed, Aug 21, 2013 at 12:56 PM, John Peterson
wrote:
>
>
>
>
> On Wed, Aug 21, 2013 at 11:42 AM, Jim Fonseca wrote:
>>
>> Hi John,
>> From make V=1
>>
>>
> Thanks.
>
> So I guess my next question is: what does "CC" do on Cray when you try to
use it for linking? Does it need to be passed a '-sh
On Wed, Aug 21, 2013 at 11:42 AM, Jim Fonseca wrote:
> Hi John,
> From make V=1
>
> make[1]: Entering directory
> `/mnt/b/projects/sciteam/jna/NEMO5_PETSc3.4_no_MAGMA_new_libmesh/libs/libmesh/libmesh'
> /bin/sh ./libtool --tag=CXX --mode=link CC -O2 -felide-constructors
> -funroll-loops -fstr
Hi John,
>From make V=1
make[1]: Entering directory
`/mnt/b/projects/sciteam/jna/NEMO5_PETSc3.4_no_MAGMA_new_libmesh/libs/libmesh/libmesh'
/bin/sh ./libtool --tag=CXX --mode=link CC -O2 -felide-constructors
-funroll-loops -fstrict-aliasing -Wdisabled-optimization -fopenmp-o
getpot_parse-
On Wed, Aug 21, 2013 at 9:07 AM, Jim Fonseca wrote:
> Hi John,
> Yes, it's an email issue. Screenshot attached.
>
I see. I think it might help if we could see the actual output of libtool,
so would you try running 'make V=1' and sending the output?
On my machine, for instance, that prints:
lib
Hi John,
Yes, it's an email issue. Screenshot attached.
Thanks,
Jim
On Wed, Aug 21, 2013 at 9:49 AM, John Peterson wrote:
> This could be an email parsing bug, but I noticed:
>
>
> On Wed, Aug 21, 2013 at 8:41 AM, Jim Fonseca wrote:
>
>>
>> $ /bin/sh ./libtool --silent --tag=CXX --mode=link
This could be an email parsing bug, but I noticed:
On Wed, Aug 21, 2013 at 8:41 AM, Jim Fonseca wrote:
>
> $ /bin/sh ./libtool --silent --tag=CXX --mode=link CC -O2
> -felide-constructors -funroll-loops -fstrict-aliasing
> -Wdisabled-optimization -fopenmp-o getpot_parse-opt
> src/apps/
Thanks Ben,
Could you please take a look at where it is failing (config.log attached).
For 0.9.2.1
Here is the line that's failing from make -n and the output when I run it.
I've
$ /bin/sh ./libtool --silent --tag=CXX --mode=link CC -O2
-felide-constructors -funroll-loops -fstrict-aliasing
-W
yes, we are doing make install. but your explanation helped to resolve that
issue--thanks!
Unfortunately I see I've created a problem with two different discussions
on the same thread but at least that first one is solved. Still looking
into the dynamic build issue...trying to narrow it down...
J
On Aug 20, 2013, at 2:06 PM, Jim Fonseca
wrote:
> Related questions: is netcdf required? I am trying with it disabled now.
> Also, why does the netcdf shared library end up in
> (contrib/netcdf/v4/liblib/.libs/libnetcdf.so.7) when all other libraries
> seems to be .libs or contrib/.libs?
>
> Th
Hi John,
No, we are doing dynamic linking. Blue Waters supports dynamic linking and
in our development phase, it seems to cause us fewer headaches, so we are
not concerned about advantages of static linking right now.
I'm pretty sure I was able to do this same configuration with a libmesh
developm
Are you wanting to build statically on the Cray? (That is, are you already
configuring with --enable-static --disable-shared?)
If so, this might be related to a similar problem we faced on BG/Q, and
there is an -all-static flag that can be passed to the link mode of libtool
that might help out.
Hi Minq,
Did you ever get this resolved? I am facing the same problem.
Thanks,
Jim
On Wed, Jul 10, 2013 at 5:55 PM, Minq Q wrote:
> Hi,
>
> I am trying to compile libmesh on Cray XE6. Using GNU compiler.
>
> Then I got an error:
>
> CC ncgentab.o
> CCLD ncgen3
> /usr/bin/ld: attem
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