Re: numpy/scipy and mkl

2016-06-17 Thread Sean Farley
Ryan Schmidt writes: >> On Jun 11, 2016, at 10:11 AM, Gideon Simpson >> wrote: >> >> I have an intel mkl license, and I know that numpy/scipy can be built >> against it for a performance boost. I was wondering two things: >> >> 1. Is it possible that we could have a variant of numpy/scipy t

Re: py-hgsubversion install fails

2016-03-19 Thread Sean Farley
j. van den hoff writes: > on one of two machines (both running 10.10.5 and current `port') > installation of py-hgsubversion fails with (end of logfile): > > 8<-- > ... > CC='/usr/bin/clang' > CC_PRINT_

Re: py-hgsubversion install fails

2016-03-19 Thread Sean Farley
j. van den hoff writes: > On Wed, 16 Mar 2016 19:41:39 +0100, Sean Farley wrote: > >> >> j. van den hoff writes: >> >>> on one of two machines (both running 10.10.5 and current `port') >>> installation of py-hgsu

Re: py-hgsubversion install fails

2016-03-19 Thread Sean Farley
j. van den hoff writes: > if it helps, I'll type in everything you want (expect `/bin/rm -r' I mean > ;-)) to get more info and solve the issue. just let me know (possibly > off-list as well). My best guess at debugging would be to clean and extract the port: $ sudo port -v clean py27-hgs

Re: pypy 5.0.0 failing to build...

2016-03-11 Thread Sean Farley
Carlo Tambuatco writes: > Uninstalling pypy @4.0.1_0 and installing pypy @5.0.0 seems to have done the > trick. > > What went wrong? It seems that pypy looks for an installed version. ___ macports-users mailing list macports-users@lists.macosforge.or

Re: pypy 5.0.0 failing to build...

2016-03-11 Thread Sean Farley
Carlo Tambuatco writes: > Upgrading pypy @4.0.1_0 to pypy @5.0.0 fails with following error: > > Building pypy > Error: org.macports.build for port pypy returned: command execution failed > Please see the log file for port pypy for details: > > /opt/local/var/macports/logs/_opt_local_var_ma

Re: dolfin on el capitan

2016-02-08 Thread Sean Farley
Gideon Simpson writes: > Since vtk5 seems to be broken on el capitan, dolfin won’t install. Is it > possible to work around that? Is there a ticket for this? I have vtk5+python+tcltk installed just fine. ___ macports-users mailing list macports-user

Re: py33-scipy problem

2016-01-26 Thread Sean Farley
Jerry writes: > On Jan 21, 2016, at 9:20 PM, David Strubbe wrote: > > David, thank you for this explanation. Installing py33-scipy +gfortran > worked. However, I have these notes. > >> As the message says, you need to select a Fortran variant. You have not. You >> can see this from the fact t

Re: IPython 4.0 and Jupyter in MacPorts

2016-01-03 Thread Sean Farley
Fielding, Eric J (329A) writes: > I only use IPython occasionally, so I just now found out that the new version > of IPython 4.0 has major changes, and MacPorts has installed the new version > in one of my port upgrades. We used to run “ipython notebook” to get the > notebook version of IPyth

Re: New Mac OS Forge administrator

2015-11-20 Thread Sean Farley
Ryan Schmidt writes: > Dear MacPorts users and developers, > > I'm pleased finally to be able to tell you that I have been hired to be your > new Mac OS Forge administrator. I have been involved in improving MacPorts > for years as a committer and as a manager, and now as a Mac OS Forge > adm

Re: MacPorts 2.3.4 has been released

2015-10-01 Thread Sean Farley
Joshua Root writes: > The MacPorts Project is pleased to announce the release of version > 2.3.4. This is a bugfix release with small changes only. See the > ChangeLog [1] for the list of changes. Thanks man! ___ macports-users mailing list macports-u

Re: OS X 10.11 status

2015-08-19 Thread Sean Farley
Dominik Reichardt writes: > Hi, > > I’m itching to switch but often need MacPorts. Do any of you have experience > yet with it *AND* MacPorts? Join the club :-( > In previous switches, I switched by using the development version of MacPorts > and following the migration steps of any major OS

Re: ipython notebook problem

2015-06-19 Thread Sean Farley
Peter Danecek writes: > Any news on this? > Or should I have a look at it? Ack, I completely forgot about this. If you can do it, that'd be great. ___ macports-users mailing list macports-users@lists.macosforge.org https://lists.macosforge.org/mailman

Re: ipython notebook problem

2015-06-17 Thread Sean Farley
Peter Danecek writes: > Hi all, > should this thread become a ticket? > This issue was observed by a one of my colleagues as well. I have not YET run > into it. I was going to get around to doing it tonight at our python group meetup, if no one else got to it before then. _

Re: ipython notebook problem

2015-06-16 Thread Sean Farley
Gideon Simpson writes: > This appears to have something to do with the recent upgrade of > py27-jsonschema from 2.4.0 to 2.5.1. As soon as I downgraded this to the > earlier version, things ran as they had in the past. > -gideon Yep, it would seem there is a new dependency based on this comm

Re: dolfin 1.5.0 and OS X 10.9

2015-01-27 Thread Sean Farley
Gideon Simpson writes: > On one my machines I still have 10.9 installed and with the recent update to > dolfin (which works fine on my 10.10 machine), I now get errors during the > build: > > _opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolf

Re: Processing of port freecad fails

2015-01-09 Thread Sean Farley
Ryan Schmidt writes: > On Jan 9, 2015, at 1:34 PM, Sean Farley wrote: >> >> Ryan Schmidt writes: >> >>> On Jan 9, 2015, at 1:16 PM, Marius Schamschula wrote: >>>> >>>> freecad used to declare +gcc48 as the default variant until >>

Re: Processing of port freecad fails

2015-01-09 Thread Sean Farley
Ryan Schmidt writes: > On Jan 9, 2015, at 1:16 PM, Marius Schamschula wrote: >> >> freecad used to declare +gcc48 as the default variant until >> https://trac.macports.org/changeset/130949 was committed. Given that this >> change set deleted fortran related default variants for a number of >

Re: Yosemite buildbot?

2014-11-06 Thread Sean Farley
Brandon Allbery writes: > On Sun, Oct 19, 2014 at 8:52 PM, Jason Mitchell > wrote: > >> Is there a buildbot in the works for Yosemite ports? I checked >> https://build.macports.org/buildslaves but didn't see anything for >> Yosemite yet. Maybe I've misunderstood the process, or am just being

Re: Installing Metis V4

2014-10-23 Thread Sean Farley
Jeremy Lavergne writes: > It seems parmetis is still version 4.0.3. Unfortunately, parmetis is not the same as metis. George decided to keep two separate projects. I have done the leg work to make parmetis depend on metis. > On Oct 23, 2014, at 10:01 AM, L.Bryce Whitson Jr. wrote: > >> I have a

Re: dolfin & petsc

2014-10-17 Thread Sean Farley
Gideon Simpson writes: > I have macports petsc 3.5.2 installed, and i tried installing sudo port > install dolfin +mpich +suitesparse +petsc +slepc. I got an error that looks > like there was some break in the functionality of Petsc, at least with regard > to dolfin: > > _opt_local_var_macpo

Re: Error installing petsc

2014-10-10 Thread Sean Farley
Daniel Watkins writes: > I attempted to install petsc using the command > sudo port install petsc +mpich +superlu +suitesparse > and was unsuccessful. The log file is attached. Ouch. This appears to be a compiler bug with clang. What OS and version of Xcode are you running? _

Re: dolfin trouble

2014-10-09 Thread Sean Farley
Gideon Simpson writes: > I did a port clean dolfin and port uninstall dolfin, and then followed it up > with sudo port install dolfin +gcc48 +mpich More than likely, it is this error: https://trac.macports.org/ticket/45157 ___ macports-users mailing

Re: dolfin issue

2014-09-30 Thread Sean Farley
Gideon Simpson writes: > I did a port uninstall and a port clean, and I got the same error. Huh. I'll try to reproduce this, then. > I do have petsc/slepc installed with mpich, if that’s part of the problem. I > suspect that petsc is built as a C library, while dolfin is C++. Perhaps > that

Re: dolfin issue

2014-09-29 Thread Sean Farley
Ryan Schmidt writes: > On Sep 29, 2014, at 7:45 PM, Gideon Simpson wrote: >> >> I don’t seem to have that file > > Ok, looks like the compiler name is just being specified as "mpicc-mpich-mp", > without a path, and cmake is incorrectly inferring that it is in the build > directory. > > Do you

Re: fortran compiler for f2py

2014-08-13 Thread Sean Farley
Clemens Lang writes: > Hi, > >> Run "port select" to read the help message about the select mechanism. I >> would think it's also documented elsewhere in more detail, though not, >> apparently, via "port help select". > > It is, in 2.3.1, but not in trunk. See > > http://trac.macports.org/brow

Re: can't upgrade py27-zmq

2014-04-14 Thread Sean Farley
Comer Duncan writes: > I have today run across a failure to update py27-zmq. The output seems > non-instructive so I am hoping to get some help. I paste the output of my > attempt here: > > comermacpro:MarkFiniteDiffDerivativs comerduncan$ sudo port upgrade py27-zmq Ah, there's your problem:

Re: MacPorts automake and python

2014-03-20 Thread Sean Farley
Adam Mercer writes: > On Thu, Mar 20, 2014 at 2:55 PM, Sean Farley wrote: > >> I tend to agree with you but need help seeing how this worked >> before. What path did automake pick up before this change? > > If you look at the patch you can see the original paths: >

Re: MacPorts automake and python

2014-03-20 Thread Sean Farley
Adam Mercer writes: > Hi > > Since automake was bumped to 1.14.1_1 it can't be used to build any > python software outside of MacPorts as it always tries to install the > python modules into MacPorts prefix. I understand why we want to > ensure that ports always installs modules into the MacPort

Re: help on 'Xcode tool not installed'

2014-02-17 Thread Sean Farley
Shiyuan writes: > Hi all, > I am on Mac 10.8.5 and Xcode 5.0.2 is installed. From Xcode > Preference/Downloads, I can see that the command line tool is installed. I > also installed again the command line too (released in 10/2013)l from the > following link > https://developer.apple.com/down

Re: building my own ports of py27-matplotib and py27-numpy

2013-11-14 Thread Sean Farley
On Thu, Nov 14, 2013 at 8:29 PM, Arturo Rinaldi wrote: > Il 15/11/13 01:37, Ryan Schmidt ha scritto: > > On Nov 14, 2013, at 15:27, Arturo Rinaldi wrote: > > Hi folks, I need some help to build my own port of these two packages. I > want to update them to their latest version (1.3.1 and 1.8.0 resp

Re: Suggestion: Time to Use Trello?

2013-06-28 Thread Sean Farley
On Wed, Jun 26, 2013 at 7:27 AM, Rainer Müller wrote: > On 2013-06-26 13:19, Rodolfo Aramayo wrote: >> Many projects out there are transitioning to trello >> >> https://trello.com/ > > What the heck does it do? The website tells me something about > organizing things. There seems to be an app, but

Re: emacs-mac-app port build failure

2013-02-14 Thread Sean Farley
On Thu, Feb 14, 2013 at 4:04 PM, Lawrence Velázquez wrote: > On Feb 14, 2013, at 4:44 PM, Marion Dumas wrote: > >> I wanted to de-install and re-install Emacs on my mac (10.5.8). I >> de-installed Emacs.app by simply deleting the contents. I then downloaded >> the emacsformac dmg installer but

Re: emacs-mac-app port build failure

2013-02-14 Thread Sean Farley
Marion Dumas writes: > Hello, > > I wanted to de-install and re-install Emacs on my mac (10.5.8). I de- > installed Emacs.app by simply deleting the contents. I then downloaded > the emacsformac dmg installer but it just doesn't work: the > application crashes at launch. I tried installing t

Re: Side effects?

2013-01-31 Thread Sean Farley
On Thu, Jan 31, 2013 at 8:25 PM, Lawrence Velázquez wrote: > On Jan 31, 2013, at 8:46 PM, Sean Farley wrote: > >> I just want to point out that this is where having a gui that is open >> source would really help: the responsibility wouldn't have to be >> shouldered

Re: Side effects?

2013-01-31 Thread Sean Farley
On Thu, Jan 31, 2013 at 7:34 PM, Ian Wadham wrote: > On 01/02/2013, at 11:05 AM, Ryan Schmidt wrote: >> On Jan 31, 2013, at 16:53, Ian Wadham wrote: >>> I did "sudo port install -k -s pallet" >> >> Single-letter flags like -k and -s have no effect unless you put them >> immediately after the word

Re: Using -std=c++11 with the macports gcc-4.7 compiler

2013-01-16 Thread Sean Farley
On Wed, Jan 16, 2013 at 10:06 PM, Jeremy Huddleston Sequoia wrote: > > On Jan 16, 2013, at 19:44, Sean Farley wrote: >>>> I personally have had clang++ bugs with libmesh, moose, armadillo, and >>>> dolfin. >>> >>> There are plenty of g++ bugs as w

Re: Using -std=c++11 with the macports gcc-4.7 compiler

2013-01-16 Thread Sean Farley
On Wed, Jan 16, 2013 at 9:32 PM, Ryan Schmidt wrote: > > On Jan 16, 2013, at 19:49, Sean Farley wrote: > >> On Wed, Jan 16, 2013 at 7:16 PM, Jeremy Huddleston Sequoia wrote: >>> >>> That being said, is there something wrong with clang++ that is causing you >

Re: Using -std=c++11 with the macports gcc-4.7 compiler

2013-01-16 Thread Sean Farley
On Wed, Jan 16, 2013 at 9:19 PM, Jeremy Huddleston Sequoia wrote: > > On Jan 16, 2013, at 17:49, Sean Farley wrote: > >> On Wed, Jan 16, 2013 at 7:16 PM, Jeremy Huddleston Sequoia >> wrote: >>> >>> On Jan 15, 2013, at 8:52 AM, Sean Farley wrote: >>

Re: Using -std=c++11 with the macports gcc-4.7 compiler

2013-01-16 Thread Sean Farley
On Wed, Jan 16, 2013 at 7:16 PM, Jeremy Huddleston Sequoia wrote: > > On Jan 15, 2013, at 8:52 AM, Sean Farley wrote: > >> On Mon, Jan 14, 2013 at 8:32 AM, David Barto wrote: >>> fails because the /usr/lib/libstdc++.so is found first. What can I do to >>> find

Re: Using -std=c++11 with the macports gcc-4.7 compiler

2013-01-15 Thread Sean Farley
On Mon, Jan 14, 2013 at 8:32 AM, David Barto wrote: > fails because the /usr/lib/libstdc++.so is found first. What can I do to > find the proper /opt/local/lib/libstdc++.so? > > I've not modified the search paths in any way, I'm just trying to compile a > c++ program using the newer standard featu

Re: running script error (eigen symmetric)

2012-12-17 Thread Sean Farley
On Mon, Dec 17, 2012 at 3:46 PM, Amy Anderson wrote: > Hi macport users, > > I am trying to run this script in python and the script is now working with > the test data (eigen problem solved) but when I input my own data to be > called by script I got the following errors. > > [moriaht-5:~/Desktop

Re: Cairo Failed to Build

2012-12-10 Thread Sean Farley
On Mon, Dec 10, 2012 at 12:01 AM, Jasper Frumau wrote: > Thanks Sean. Looking forward to the patch! Ok, I've just posted my patches to get it working here: https://trac.macports.org/ticket/37254 Hopefully, they can be tested and committed by a macports developer soon. Let me know if there are a

Re: py25-cairo Fails to build

2012-12-10 Thread Sean Farley
On Mon, Dec 10, 2012 at 12:47 PM, Rodolfo Aramayo wrote: > I am experiencing problems building py25-cairo in all my computers > I am attaching the log file > Will wait for ideas before filing a bug report? This is due to py25-cairo needing to have an older version of py2cairo, as reported here:

Re: Cairo Failed to Build

2012-12-09 Thread Sean Farley
On Sun, Dec 9, 2012 at 11:55 PM, Jasper Frumau wrote: > cairo failed to build. Here is the tail of the main log: > > tail -n 20 > /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py-cairo/py25-cairo/main.log > :info:build ^ > :info:bu

Re: ipython3 port not working ?

2012-12-04 Thread Sean Farley
On Tue, Dec 4, 2012 at 12:25 PM, Trémouilles David wrote: > Maybe I was not precise enough. I meant py33-ipython > ipython version for python33. Are your running precisely > this version with the few patches you mentioned ? Yep, I understood. I still don't know how that path of yours got there /

Re: running script error (eigen symmetric)

2012-12-04 Thread Sean Farley
On Mon, Dec 3, 2012 at 10:35 AM, Amy Anderson wrote: > Dear macports-users, > > I am a new macports, python, and scipy user and I am looking for some help > to troubleshoot an error I have been getting when trying to run a script in > python. The script I am trying to run is called pyCluster ROI a

Re: ipython3 port not working ?

2012-12-03 Thread Sean Farley
On Mon, Dec 3, 2012 at 11:06 PM, Trémouilles David wrote: > Hello, > > Is ipython3 working for you ? I have a few patches that update ipython to 0.13.1 and correctly fixes a missing py-matplotlib dependency. That might be what you're seeing here, but I'm not 100% sure. (I'll be sending these patc

Re: pandoc

2012-11-03 Thread Sean Farley
On Sat, Nov 3, 2012 at 7:04 PM, Clemens Lang wrote: > On Sat, Nov 03, 2012 at 03:23:27PM -0400, Lenore Horner wrote: >> I see there is a ticket from a few weeks ago that may be related, but >> there's not closure or work-around suggested. >> https://trac.macports.org/ticket/36608 > > The solution

Re: Problem intalling Pandoc

2012-09-28 Thread Sean Farley
On Fri, Sep 28, 2012 at 8:41 AM, Ryan Schmidt wrote: > > On Sep 28, 2012, at 06:27, Trémouilles David wrote: > >> ---> Fetching archive for hs-pandoc-types >> ---> Attempting to fetch hs-pandoc-types-1.8_0.darwin_11.x86_64.tbz2 from >> http://lil.fr.packages.macports.org/hs-pandoc-types >> ---

Re: Mecurial

2012-08-04 Thread Sean Farley
On Sat, Aug 4, 2012 at 11:35 PM, Phil Dobbin wrote: > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA1 > > just a traceback further to this problem. Hope it helps: > > `$ hg log --traceback [snip] > "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/mercurial

Re: Oddity using Xcode 4.4 on OS 10.7.

2012-07-27 Thread Sean Farley
> I'm curious if this is still happening. If anyone sees this issue when > initiating the install from XCode's preferences (*after* this email), please > let me know. I can try later this afternoon, if not before and let you (and the list) know. ___ m

Re: Build Petsc with Shared Libraries

2012-07-19 Thread Sean Farley
> I see that you use many variants in your Portfile. As a rule of thumb most > functionality should be enabled by default. Couldn’t most be enabled by > default (possibly as a default_variant)? Sure; I have no preference either way. My only note is that the --download-* options shouldn't be used

Re: Build Petsc with Shared Libraries

2012-07-19 Thread Sean Farley
> Sean, it's up to the maintainers of those ports as to whether they would like > to incorporate your changes, and for the petsc port, I would encourage you to > file a bug report with a diff with these changes and explanations about why > the changes need to be made. That actually was my plan

Re: Build Petsc with Shared Libraries

2012-07-18 Thread Sean Farley
> The libraries have not been linked correctly. I assume the first line in > otool -L /opt/local/lib/petsc/lib/libpetsc.dylib contains the > worksrcdir, which causes this issue when linking against it. > > Please file a bug so the maintainer can fix this. The PETSc portfile is very wrong, particul

Re: gfortran with Xcode 4.3.2 unreliable

2012-06-09 Thread Sean Farley
> There was a thread ~1 month ago regarding gfortran that was acting > strangely.  Here's a link to that > thread: http://lists.macosforge.org/pipermail/macports-dev/2012-May/019098.html > > I haven't seen any responses or anything to this, and I was wondering if > anyone else had run into issues t

Re: Trying to install ld64 port from source, but binaries installed instead?

2012-05-09 Thread Sean Farley
> Right. We never really announced the availability of binaries, but they've > been available for Snow Leopard since last year and Lion since this year. > > Is there a reason why you want to build ld64 from source -- is there > something wrong with the binary on our server? If so, we need to know

Re: Trying to install ld64 port from source, but binaries installed instead?

2012-05-09 Thread Sean Farley
> I just tried to "port install ld64", and instead of compiling from source, > it downloads a .tbz2 package from packages.macports.org which contains the > binaries. I guess I thought macports always built from source unless you > added "pkg" to the port command? Thanks for any help. This is a new

re: strange gfortran problem

2012-05-05 Thread Sean Farley
(cc'ing macports-dev) > The problem is actually with MacPorts 4.3.2. A little more accurately, this > is NOT an actual bug. The problem is that the behavior you are seeing is > allowed under the Fortran standard -- that's why selected_int_kind exists in > the first place. This is wrong. The Fo