Re: [Mauve-users] new user

2016-01-12 Thread Aaron Darling
Hi Enrico, it looks like you may have run the software from the command line on a machine without an X11 display. Can you confirm? The java component of Mauve is primarily for visualizing genome alignments and usually requires a display. If you want to calculate an genome alignment from the command

[Mauve-users] new user

2016-01-12 Thread Enrico Tortoli
Dear all I have downloaded MAUVE and installed it on my PC with Linux (Ubuntu 64 bits). Please find attached the report I get when attempting to run the software. Is it a problem of Java? Others programs requiring Java don't seem to have problems. Thanks for your help aaron.darl.

[Mauve-users] stripSubsetLCBs error

2016-01-12 Thread Prabh Basra
Hello Users, I have used progressive mauve to align 42 genomes and then used the stripSubsetLCBs to extract the core genome. However, now when I try to open my core alignment using the Mauve GUI it gives me an error. Exception in thread "Thread-4" java.lang.ArrayIndexOutOfBoundsException: gen