Raymond, you've probably figured this out already, but since I was looking
for discussion of these files, I'll answer your email. The SNP file doesn't
address gaps, doesn't depend on the contig mover. The three fields for
every genome represent the contig name (the fasta header line of the
sequence
Hi all,
Has anyone tried to convert the SNP and/or indel format that Mauve exports
into a VCF-like format? I've aligned assembled genomes to a reference
genome, and would like to predict the effect of various differences, and
tools like snpEff required VCF input. I plan to try to write my own, but
