[Mauve-users] Extract coordinates from LCB blocs without xmfa file

Dear all, I'm struggling in a Mauve analysis and wonder if someone could help me. I'm studying 13 genomes from diff bacteria and I performed a progressiveMauve alignment from the graphical interface using the last version of Mauve snapshot for Linux (2015-02-13). I have as output the follow file

Re: [Mauve-users] Calculating a "real" whle genome pyhlogenetic tree using mauveAligner

Hi Shlomo, The short answer is probably not, because progressiveMauve is unlikely to scale to > 100 bacterial genomes. Might be ok for small viruses. You might try the harvest tools by Todd Treangen & colleagues: http://harvest.readthedocs.io/en/latest/content/parsnp/tutorial.html It computes only