I see. It looks like you've got some large assemblies that are likely
to be multichromosomal and possibly in multiple contigs.
Unfortunately xmfa2maf only supports finished unichromosomal
assemblies.
Depending on what you intend to do next you might be able to get a
hackish solution by simply con
Hi Aaron, i executed the xmfa2tomaf in the original locations, it doesn't
work completely.
i don't know what i must edit in the .xmfa file. May be i must masque
first the repeated sequences of the genomes before progressiveMauve ?
Here what i did:
$ ./xmfa2maf threeway.xmfa threeway.maf
Sequenc
