Sounds like there is something unusual in one of your plasmid
sequences. It should take less than a minute to align a pair of
Borrelia-sized genomes, even with plasmids included. If you can send
the zipped genomes with plasmids to my personal email (off-list) I can
investigate further.
Best,
-Aaron
Dear Aaron,
thank you very much for the quick response. I will try that. I have to say that
if I use only the main chromosome for the reference, the alignment works. So,
perhaps I should explain that these are Borrelia genomes that I would like to
align and they consist of a main chromosome and
Hi Gabriele,
First suggestion, try copying the sequence files from your file server
over to the local disk (C:) and running the alignment, in order to rule
out a network file access problem.
If that fails, can you tell us what version of windows you are using,
and also whether progressiveMauve.exe
Hi, I tried to make an alignment in Mauve using two fasta files. The alignment
did not run but I got the following message:
OS name is: Windows 7 arch: amd64
Executing:
win64\progressiveMauve
--output=\\umwelt.bayern.de\LGL-Users\Home\OS_L-Z\Margos_G\Dokumente\Bob
Lane\CA690\Mauve CA690\PKo_CA6
