Sounds like the "/skeethocky mushrooms"/ problem again.
peter
On 10/02/2016 10:12 PM, ZACHARY COHEN wrote:
hello,
I am trying to use Mauve to align my scaffolds.fa output from a Spades
de novo assembly against a reference, but received an error. I've
attached the error output file for your
Hi Hongxian,
I was able to do those alignments on a windows desktop with 16GB RAM, so
my recommendation is to re-download the genebank files from NCBI, and
try again using the DEFAULT parameters (including NOT renaming the
output files). the error
"Unhandled gnException: Exception FileNotOpe
Hi Annalisa
It isn't unusual for this to run for a week. As long as you aren't
getting any errors, it's probably working.
Peter
On 06/08/2016 6:29 AM, annalisa giampetruzzi wrote:
Dear Prof. Aaron Darling and Mauve users,
I'm writing to you to ask some questions about the use of
progressive
Hello Lu and everyone,
This is an old thread, but it would help me a lot if we could core
extract an alignment in fasta format from the stripSubsets
core_alignment.xmfa file.
Using 6 aligned genomes, and following Lu's instructions exactly, I am
getting 6 error messages:
MAUVE>perl xmfa2fas
convert from Windows
end-of-line (EOL) format to linux format.
I hope that helps.
Peter Hoyt
Oklahoma State University
On 11/14/2014 5:43 PM, Hullahalli, Karthik wrote:
> Dear Support Group,
>
> I have aligned 78 Enterococcus faecalis genomes, and I am currently trying to
> construct
What are the distance units produced with the Progressive MAUVE Guide tree?
--
-
Peter R. Hoyt, Ph. D.
Oklahoma State University
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This question is probably for Aaron. Thank-you Aaron for all your hard
work on this software and the others.
We are aligning 16 (or more) bacterial genomes to update some species
classifications. The problem is a lot of horizontal gene transfer in
these bugs. After a 16 genome alignment, and usi
.html
Apologies for not doing a good search ahead of my request.
Probably the JRE problem was answered four years ago also... I'll go
check now.
Peter
On 07/22/2014 2:01 PM, Peter Hoyt wrote:
Hi everyone. Sorry if this has been asked before, but I can't seem to
install the sna
Hi everyone. Sorry if this has been asked before, but I can't seem to
install the snapshot using the mauve_installer_20120303.exe: error given
is "Could not detect a suitable 64-it Java Runtime environment. Mauve
requires Java version 1.4 or later..."
I'm running JRE 6 for 64-bit and also have
