Re: molecular and radioactivity

2009-12-11 Thread Michael Sullivan
Although I don't use radioactivity often, there are still a few procedures where I do or would choose to use it. For blotting/hybridization procedures, I would still choose radioactivity, hands down. As far as I know, most non-radioactive detection procedures require an immunoblot-like dete

Re: pfu vs long pcr mix enzyme

2010-01-18 Thread Michael Sullivan
My opinion is that you should ALWAYS sequence PCR products if in the end it will be important to have it error free (i.e. you are trying to express active protein). Even with a high fidelity enzyme, there can still be an errors . Sequencing now is a lot easier than doing a bunch of experime

Re: seperating 3.5 and 3.3 kb in agarosegel

2010-01-21 Thread Michael Sullivan
As Peter suggested, if this is for recloning into another vector, it may be easier to "shotgun" clone both fragments and sort them out later since it is relatively easy to distinguish small differences in fragment size, but sometimes difficult to cleanly isolate such fragments. If you pla

Re: preparation of glycine competent cells..

2010-01-30 Thread Michael Sullivan
I'm not sure I understand what you are doing. Really, for recombinant protein expression you only would need to recover a single colony containing your construct. People typically grow liquid cultures to produce recombinant proteins. If you are including IPTG in your plates (and it sounds l

Re: Alternative for PD-10 columns?

2010-02-02 Thread Michael Sullivan
On Feb 2, 2010, at 6:16 AM, Nick Theodorakis wrote: On Feb 2, 5:26 am, WS wrote: Dear Experts, is there any commercial (and preferably cheaper) alternative to PD-10 desalting columns? (They are filled with Sephadex G-25, sample volume is up to 2.5ml, elution volume is 3.5ml). Buy the empt

Re: plasmid from non viable glycerol stock

2010-03-24 Thread Michael Sullivan
Does anything grow from these on plates with no selection? A conservative thing to try might be to remove a large chunk of the frozen stock and grow it in LB medium without selection for an hour or so... maybe this would give any viable cells a bit of time to recover if they weren't froz

Re: Sealing Tape for Petri Dishes?

2010-08-27 Thread Michael Sullivan
Wo, from your post, it's not quite clear exactly what type of product you are talking about and what the application is. For plant tissue culture, we use 3M micropore tape (a sort of porous cloth tape), which when sold to be used in tissue culture can be quite expensive. I buy it from an on

Re: Hello...Native Page is not polymerising

2011-10-24 Thread Michael Sullivan
--- On Oct 24, 2011, at 10:02 AM, AllisonH wrote: > On 24/10/2011 3:54 AM, DK wrote: >> In article, >> lautys wrote: >>> APS should prepare fresh every time you do your gel. >> >> For how much longer will this myth be propagated? >> >> There is nothing wrong with aliquoting APS and storing

Re: "Best" chemiluminiscent Westen detection?

2012-01-18 Thread Michael Sullivan
I've not done much comparison, but I've been using Bio-Rad's Immun- Star substrate for years. I use it with PVDF. There's an added enhancer for use with nitrocellulose, but I don't use NC, so I don't now how well that works. I've found the signal very long lived. Don't know about the price e

Re: Methods Digest, Vol 82, Issue 4

2012-03-09 Thread Michael Sullivan
I think this is a needless worry! Water has almost no buffering capacity, so a tiny amount of dissolved CO2 impacts water's pH. This amount of CO2 is very small compared to the amount of ACTUAL buffer (TRIS, phosphate, whatever) you are using, so will generally have only a negligible effect on p

Re: Ammonium sulfate precipitation from solutions with high sugar content

2012-04-30 Thread Michael Sullivan
What do you want to use the protein for? I had a very dilute, yet viscous extract of flowers that I wanted to use for western blotting. Carbohydrates made it visous, interfered with protein assays, and made the samples run quite poorly in a gel. I ended up using a phenol extraction method follo

Re: Some funny (?) comics

2012-05-04 Thread Michael Sullivan
This is one of my all time favorite from when I was in grad school: http://www.history.ucsb.edu/faculty/marcuse/images/ComicGradSchoolHell72dpi550pxw.jpg --- Michael L. Sullivan, PhD Research Molecular Geneticist US Dairy Forage Research Center 1925 Linden Drive Madison, WI 53706 608-890-0046 (Pho

Re: LiCl precipitation?

2013-03-11 Thread Michael Sullivan
Well Ed can clarify. His original post is somewhat ambiguous: he didn't really say what he wanted, just that he wanted to precipitate the RNA. It sounded to me like he wanted to get rid of RNA from a plasmid miniprep, especially with his follow up post. But I agree that if he wanted high qualit

Re: Any experiences with Geneamp 9700 cycler?

2013-04-16 Thread Michael Sullivan
We've had the 9700 (over 10 years) for quite some time (over 10 years) with no real problems. Are you using the little black tube insert for single tubes and the red one for strip tubes? Without those you will crush the tubes (but I think these are similar to what gets used with the 2700 (which

Re: Any experiences with Geneamp 9700 cycler?

2013-04-26 Thread Michael Sullivan
Yeah, I haven't quite figured out why they designed it this way, although the tube holder is sort of nice for working with the strip tubes. I don't think there's a way to adjust how much pressure the lid applies (like the MJ DNA engine [now biorad?] has), so maybe ABI's approach with the 9700 wa

Re: performing statistics on normalized data

2013-08-11 Thread Michael Sullivan
used to extract the tissue, in addition there is >> loss due to apparatus (such as homogenizers), etc. There should be some >> non-enzymatic standard for normalization, such as the Bradford assay or >> proteins. Even better look at a composite score such as observed over >>