[MORPHMET] Save aligned in TPSRelW

2017-06-22 Thread Pere Ibáñez
Hello All, I am using TPSRelW to slide semilandmarks. Once I have the consensus, I use Save aligned to export the aligned coordinates (including slid semilandmarks) as a tps file, that I want to import into MorphoJ. The problem is that the file that is exported has the IDs of the specimens

[MORPHMET] Sets of variables in a two-block PLS regression

2017-06-09 Thread Pere Ibáñez
Hello All, I am performing a PLS regression between two sets of variables. The first one are landmark coordinates of Procustes aligned specimens. The second one are ecological variables. These ecological variables have different units. Can I input these ecological variables in block 2 even if

[MORPHMET] Error in estimate.missing (package geomorph)

2017-01-31 Thread Pere Ibáñez
I have an array (p x k x n) of landmark corrdinates for a set of specimens. Some of them have missing landmarks (NA). I am trying to estimate these landmarks using: estimate.missing(nameofmyarray, method = "Reg") And I get this error: Error in incomplete[lndmk, , i] <- tmp : replacement has

Re: [MORPHMET] placePatch in Morpho (R)

2016-03-11 Thread Pere Ibáñez
y) since I think I that’s what it uses to match the LM > array to the mesh. > > > > M > > > > > > > > *From:* morp...@morphometrics.org [mailto: > morp...@morphometrics.org ] *On Behalf Of *Pere Ibáñez > *Sent:* Thursday, March 10, 2016 7:38 AM >

[MORPHMET] placePatch in Morpho (R)

2016-03-10 Thread Pere Ibáñez
I am using the function placePatch in Morpho: placePatch(atlas, dat.array, path, prefix = NULL, fileext = ".ply", ray = TRUE, inflate = NULL, tol = inflate, relax.patch = TRUE, keep.fix = NULL, rhotol = NULL, silent = FALSE, mc.cores = 1). I already created the atlas using createAtlas, and I

[MORPHMET] Semilandmarks on diaphyses

2015-12-15 Thread Pere Ibáñez
Hello everyone, We are designing a procedure to place semilandmarks all over the surface of long bone diaphyses, but we are struggling to decide what software we should use. We cannot use Landmark editor because it uses patches with 9 definable landmarks (and there are not 9 definable points

[MORPHMET] Geomorph R package: digit.curves (several curves with different starting points at once)

2015-11-09 Thread Pere Ibáñez
Hello everybody, I need to ask something in relation to digit.curves in R package geomorph, because I think that there must be a really fast way to do something that I was going to do specimen by specimen. I created a (p x k x n) array using readland.tps from a tps file containing