Re: [Numpy-discussion] linalg.svd not working?

2009-05-08 Thread Muhammad Alkarouri
Replying to myself, just that the experience may benefit a later user. --- On Wed, 6/5/09, Muhammad Alkarouri wrote: > From: Muhammad Alkarouri > Subject: Re: [Numpy-discussion] linalg.svd not working? ... > It is an atlas problem. Not that I knew how to correct it, > but I was a

Re: [Numpy-discussion] linalg.svd not working?

2009-05-06 Thread Muhammad Alkarouri
--- On Wed, 6/5/09, David Cournapeau wrote: ... > Ok, so that's not a gfortran problem. As Chuck, I think > that's an atlas > problem (you could check by compiling without ATLAS: It is an atlas problem. Not that I knew how to correct it, but I was able to build numpy with a standard package bla

Re: [Numpy-discussion] linalg.svd not working?

2009-05-06 Thread David Cournapeau
Muhammad Alkarouri wrote: > --- On Wed, 6/5/09, David Cournapeau wrote: > ... > >> What does ldd lapack_lite.so returns (lapack_lite.so is in >> numpy/linalg, >> in your installed directory) ? It may be that numpy uses >> gfortran, >> whereas ATLAS is built with g77. gfortran and g77 should >>

Re: [Numpy-discussion] linalg.svd not working?

2009-05-06 Thread Muhammad Alkarouri
--- On Wed, 6/5/09, David Cournapeau wrote: ... > What does ldd lapack_lite.so returns (lapack_lite.so is in > numpy/linalg, > in your installed directory) ? It may be that numpy uses > gfortran, > whereas ATLAS is built with g77. gfortran and g77 should > not be mixed, Thanks David. I went ther

Re: [Numpy-discussion] linalg.svd not working?

2009-05-06 Thread David Cournapeau
Muhammad Alkarouri wrote: >> Date: Tue, 5 May 2009 09:24:53 -0600 >> From: Charles R Harris >> > ... > >> This is almost always an ATLAS problem. Where did your >> ATLAS come from and >> what distro are you running? >> > > You are probably right. I compiled and installed ATLAS from so

Re: [Numpy-discussion] linalg.svd not working?

2009-05-06 Thread Muhammad Alkarouri
> Date: Tue, 5 May 2009 09:24:53 -0600 > From: Charles R Harris ... > This is almost always an ATLAS problem. Where did your > ATLAS come from and > what distro are you running? You are probably right. I compiled and installed ATLAS from source. The distro is Redhat Enterprise Linux 4. I had to

Re: [Numpy-discussion] linalg.svd not working?

2009-05-05 Thread Charles R Harris
On Tue, May 5, 2009 at 8:36 AM, Muhammad Alkarouri wrote: > > Hi everyone, > > I have installed numpy 1.3.0 on Python 2.5.1 in an x86_64 machine, and it > hangs when I do a numpy.test(verbose=10) on > test_pinv (test_defmatrix.TestProperties) ... > which I believe hangs on a call to numpy.linalg.s

[Numpy-discussion] linalg.svd not working?

2009-05-05 Thread Muhammad Alkarouri
Hi everyone, I have installed numpy 1.3.0 on Python 2.5.1 in an x86_64 machine, and it hangs when I do a numpy.test(verbose=10) on test_pinv (test_defmatrix.TestProperties) ... which I believe hangs on a call to numpy.linalg.svd. Can you please help me with this problem? The installation and c