Re: [Open Babel] Need complementary information on FP2

2011-12-16 Thread Chris Morley
On 16/12/2011 11:01, Marianne wrote: > Dear all, > > In order to have fingerprint of reactions, is it possible to make > fingerprint (FP2) difference between 2 (or more) compounds, ? (as daylight > finger print do in section 6.2.2 here > http://www.daylight.com/dayhtml/doc/theory/theory.finger.html

Re: [Open Babel] Need complementary information on FP2

2011-12-16 Thread Ernst-Georg Schmid
Hi, from the finger2.cpp source: For each of these fragments the atoms, bonding and whether they constitute a complete ring is recorded and saved in a std::set so that there is only one of each fragment type. Chemically identical versions, i.e. ones with the atoms listed in reverse order and rin

[Open Babel] Need complementary information on FP2

2011-12-16 Thread Marianne
Dear all, In order to have fingerprint of reactions, is it possible to make fingerprint (FP2) difference between 2 (or more) compounds, ? (as daylight finger print do in section 6.2.2 here http://www.daylight.com/dayhtml/doc/theory/theory.finger.html ) More specifically, I can not find if in the

Re: [Open Babel] Similarity Searching in fs-File

2011-12-16 Thread Chris Morley
On 16/12/2011 08:00, Jochen Schreiber wrote: > Hello guys, > > i think i have a problem with my syntax. > > I have an sdf-File then i make an mol-File with: babel input.sdf -omol > query.mol > > and then i want to search with the query-File against one fs-File: > > babel Compound_1_250

[Open Babel] Similarity Searching in fs-File

2011-12-16 Thread Jochen Schreiber
Hello guys, i think i have a problem with my syntax. I have an sdf-File then i make an mol-File with: babel input.sdf -omol query.mol and then i want to search with the query-File against one fs-File: babel Compound_1_25000.fs babelresult.sdf -sbabelsearch.mol -at0.85 But i became