Re: [Open Babel] Option to input net charge and to disable adding protons

2012-10-08 Thread David van der Spoel
On 2012-10-07 22:53, Reinis Danne wrote: On Sun, Oct 07, 2012 at 10:06:57PM +0200, David van der Spoel wrote: On 2012-10-07 21:28, Reinis Danne wrote: On Sun, Oct 07, 2012 at 08:32:53PM +0200, David van der Spoel wrote: On 2012-10-07 18:35, Reinis Danne wrote: On Sun, Oct 07, 2012 at

Re: [Open Babel] More problems reading Gaussian pdb files

2012-10-08 Thread David van der Spoel
On 2012-10-08 10:55, David van der Spoel wrote: Hi, To answer my own question: I now installed trunk, the development version. The gaussian files now work fine, but the fulvene.pdb file still gives problems: % babel --version No output file or format spec! Open Babel 2.3.2 -- Oct 8 2012 --

Re: [Open Babel] More problems reading Gaussian pdb files

2012-10-08 Thread David van der Spoel
On 2012-10-08 14:45, David van der Spoel wrote: On 2012-10-08 10:55, David van der Spoel wrote: Hi, To answer my own question: I now installed trunk, the development version. The gaussian files now work fine, but the fulvene.pdb file still gives problems: % babel --version No output file

Re: [Open Babel] More problems reading Gaussian pdb files

2012-10-08 Thread David van der Spoel
On 2012-10-08 19:11, Reinis Danne wrote: On Mon, Oct 08, 2012 at 03:00:30PM +0200, David van der Spoel wrote: On 2012-10-08 14:45, David van der Spoel wrote: On 2012-10-08 10:55, David van der Spoel wrote: Hi, To answer my own question: I now installed trunk, the development version. The

Re: [Open Babel] More problems reading Gaussian pdb files

2012-10-08 Thread Reinis Danne
On Mon, Oct 08, 2012 at 07:40:51PM +0200, David van der Spoel wrote: On 2012-10-08 19:11, Reinis Danne wrote: On Mon, Oct 08, 2012 at 03:00:30PM +0200, David van der Spoel wrote: It adds TWO H for InChi output, not for SDF output, but it only produces two double bonds (out of three). I