Ok
Thanks for the interest
Now, i need to convert the format, only
and it's necessary that it has the best fidelity possible with the original
structure
I think it's openbabel can't help me
I'm going to research more
2014-04-15 19:09 GMT-03:00 Dimitri Maziuk :
> On 04/15/2014 03:59 PM, Wellisson
On 04/15/2014 03:59 PM, Wellisson Gonçalves wrote:
> Sorry but i don't understand your answer
OpenBabel deals with molecules.
PDB deals with studies of crystal structures, extended (with varying
degree of success) to structures obtained from EM, NMR, and other methods.
The "study" includes much
Sorry but i don't understand your answer
What's OBMol and what can it do ?
in fact babel in openbabel don't translate the file completely
it's omits a lot of information.
I don't worried about this
The point is how different and reliable it is
2014-04-15 14:14 GMT-03:00 Dimitri Maziuk :
> On 04/
On 04/14/2014 08:51 AM, David Hall wrote:
> Can you explain what parts of the file are not compatible that you are
> looking at? Residue numbering? Temperature Factors? Testing briefly, it
> appears the coordinates agree, so knowing that fields you are looking to
> preserve would be useful.
SEQRES
Can you explain what parts of the file are not compatible that you are
looking at? Residue numbering? Temperature Factors? Testing briefly, it
appears the coordinates agree, so knowing that fields you are looking to
preserve would be useful.
-David
On Sat, Apr 12, 2014 at 3:20 PM, Wellisson Gonç
I know about that
But i don't get compile
I receive a lot of compilation errors
But a find a other tool
http://sw-tools.pdb.org/apps/CIFTr/index.html
It's very simple
But i'm developing a bioinformatics tool using C++ with QT
for platforms linux, MAC OS X and windows
It's necessary to me put a f
On 4/12/2014 2:20 PM, Wellisson Gonçalves wrote:
> A use the executable babel with parameters
> babel -icif '4POQ.cif' -opdb '4POQ_cif_to_pdb.pdb'
>
> And i received the file that not compatible with the original file.
>
> I know becouse i downloaded the original file in website 4POQ.pdb and
> It
