Re: [opencog-dev] OpenCog Hyperon status?

hi linus, i did successfully try the example code, it worked without a hitch. internally to snet, the team working on importing flybase ran into the same problem you did, the result is too large for available machines and directly converting from the sql dump to metta is the current approach.

Re: [opencog-dev] UnionLink, IntersectionLink, ComplementLink

i don't have specific code references off the top of my head but imported moses models are boolean functions using these link types, is that relevant here? On Tuesday, September 14, 2021 at 4:46:59 AM UTC-4 Nil wrote: > On 9/10/21 18:41, Linas Vepstas wrote: > > Nil, BTW: we could arrange the

Re: Opencog, PLN, AtomSpace [was Re: [opencog-dev] Re: MOZI web UI]

or most programmers. It doesn't have > API's that are instantly recognizable to users of these other systems. > There is a challenging learning curve involved, here. We're sorry about > that: if you have ideas for better API's that would allow the AtomSpace to > look more conventional, a

Re: Opencog, PLN, AtomSpace [was Re: [opencog-dev] Re: MOZI web UI]

this is very cool, ivan! two suggestions would be to indicate on the ovals with a tick mark where the off-screen nodes are to guide navigation, and a permanent slider/[+,-] buttons for global zoom control. (i know these are obvious) On Tuesday, July 13, 2021 at 7:15:09 AM UTC-4

Re: [opencog-dev] Re: MOZI web UI

linus, here is a suggestion for a useful domain agnostic graphical interface to attract opensource devs to opencog and lower the learning curve for the opencog system. start with a knowledge metagraph complex enough to be a useful for the "intro to opencog" tutorial, which would include the

Re: [opencog-dev] MOZI web UI

hi linus & interested folks! some mozi background: the mozi project is on hiatus but the plan includes a graphical interface to the bio-atomspace that fulfills linus' requirements for allowing easy exploration of & interaction with the atomspace metagraph. regarding the existing code base,

Re: AGI & Robotics & Sophia [was Re: New user [was Re: [opencog-dev] Problem in atom deletion from postgreSQL

yes, the website i linked to is incorrect, sorry about that! On Friday, April 2, 2021 at 2:07:14 PM UTC-4 Dave Xanatos wrote: > Looks like it is 3pm EDT, fyi. See you then  > > > > *From:* ope...@googlegroups.com *On Behalf Of > *Michael > Duncan > *Sent:* Friday

Re: AGI & Robotics & Sophia [was Re: New user [was Re: [opencog-dev] Problem in atom deletion from postgreSQL

it looks like 2pm edt, i'll be there! https://time.is/EET On Thursday, April 1, 2021 at 3:55:12 PM UTC-4 Nil wrote: > Alright, so the time is > > Friday 2 Apr, 9pm EET (3pm EDT, if I'm correct) > > and the place is > > https://meet.jit.si/proto-agi > > Everybody is invited. > > Nil > > On

[opencog-dev] Re: Anticipatory Reading was Re: [Link Grammar] [LinkGrammar] Progress report on a tcp client bean

jack, there is lots of work is being done applying opencog to biomedical problems and we've opened up development of the annotation-scheme code and all associated database imports to the atomspace (bio-atomspace) as part the covidathon hackathon. here are links to descriptions of what is

Re: [opencog-dev] Basic Question Moses Combo Program

; functionality. > > On Monday, 10 February 2020 14:53:06 UTC+11, Michael Duncan wrote: >> >> if you are familiar with R you can use the wrapper code i wrote for >> binary classification problems: https://github.com/mjsduncan/Rmoses >> >> the documentation is crappy and

Re: [opencog-dev] Basic Question Moses Combo Program

if you are familiar with R you can use the wrapper code i wrote for binary classification problems: https://github.com/mjsduncan/Rmoses the documentation is crappy and it needs to be rewritten in the tidyverse idiom but it handles producing and scoring combos on training and testing

Re: [opencog-dev] Bioinformatics

hi abu, sorry for the delay in responding. most current work on opencog based bioinformatics is happening in the context of singularitynet services (see here ). much of the current agi-bio repo is outdated but i'm slowly getting it up to speed. the *biosciences*

[opencog-dev] Re: A Script to parse the ENVO.obo environmental ontology into Scheme AtomSpace representation

hi johannes, i helped write some of the (now mostly outdated) code in the agi-bio repo. i've been following this conversation but have been too busy working on a gene annotation service that includes a new version of the atomspace representation and import scripts for the gene ontology that we

[opencog-dev] Re: digging into MST-Parser code

hi linus, given your assertion that the atomspace is fundamentally better than the other graph databases out there, wouldn't it be strategic from an ecosystem point of view to reconceptualize the functional distinction between the atomspace repo and the opencog repo as a graph database and (proto)

[opencog-dev] maximizing feature diversity in moses model ensembles

can any moses gurus comment on using the diversity scoring options? for some bioinformatics work we are more interested in evolving a minimal ensemble of models to maximally represent the patterns distinguishing two sample sets rather than just maximizing out of sample prediction accuracy.

[opencog-dev] Re: Preloading atomspace with initial data

it's a hack but you could put (load "output2.scm") in your ~/.guile file or some other guile config file so it would automatically load when guile is invoked. or the guile -l flag will run an arbitrary scheme file... On Friday, February 16, 2018 at 8:55:13 AM UTC-5, Eyob wrote: > > Is it

[opencog-dev] Re: Expected pass level on unit tests?

works for me, thx! On Tuesday, January 30, 2018 at 4:01:26 PM UTC-5, Randy Deborggraeve wrote: > > Atomspace unit test should be at 100% now > -- You received this message because you are subscribed to the Google Groups "opencog" group. To unsubscribe from this group and stop receiving emails

Re: [opencog-dev] Re: Expected pass level on unit tests?

On Friday, January 26, 2018 at 1:59:58 AM UTC-5, linas wrote: > > > > On Thu, Jan 25, 2018 at 10:38 PM, Michael Duncan <mjsd...@gmail.com > > wrote: > >> started randomly trying to run opencog with python 3. >> > > The atomspace python bindings

Re: [opencog-dev] Re: Expected pass level on unit tests?

that you need is on apt-get already, and using pip or > conda is gauranteeed to install a second copy of things that is not > compatible, and *WILL* with 100% certainty, cause crazy-making failures. > > --linas > > On Thu, Jan 25, 2018 at 2:07 AM, Michael Duncan <mjsd...@

Re: [opencog-dev] Re: Expected pass level on unit tests?

also make sure >> you did a `sudo make install` so that you are not picking up old, stale >> junk from /usrlocal.. that should be enough to make the test pass. >> >> --linas >> >> >> On Thu, Jan 18, 2018 at 1:03 PM, Michael Duncan &l

[opencog-dev] Re: Expected pass level on unit tests?

thanks, ed! this is great. can you add the actual failing tests to your table? for 16.04 i'm only getting a fail in atomspace for 118 CythonGuile and for Opencog The following tests FAILED: 2 - AtomSpacePublisherModuleUTest (OTHER_FAULT) 6 - AtomOcTreeUTest (SEGFAULT)

[opencog-dev] Re: Getting Segmentation Fault error while trying execute scheme code using the python api

i get a segfault also, you should post a githubb issue. On Thursday, December 28, 2017 at 11:59:36 AM UTC-5, Xabush Semrie wrote: > > I have MOSES training results in scheme format that is I want to import to > the atomspace. I am using the OpenCog python api to access the atomsapce > and

Re: [opencog-dev] how would one convert boolean expressions of atoms into disjunctive normal form?

ction and enabling some experimental > flags. I have forgotten the details of that but, if that seems worthwhile > to you, I can dig that up. > > Nil > > On 11/17/2017 03:03 PM, Michael Duncan wrote: > >> i want to convert moses models from elegant normal form to disjunctive

[opencog-dev] how would one convert boolean expressions of atoms into disjunctive normal form?

i want to convert moses models from elegant normal form to disjunctive normal form to get a set of conjunctions whose features can then be used for inference against background knowledge. for instance, if a model is converted to DNF and has the clause: (and geneV ~geneW geneX ~geneY ~geneZ)

Re: [opencog-dev] How to get started with Opencog

hi, fellow sr soccer alumnus! the cogutil binary is built from a seperate github repo so make sure it's getting installed and check where it's getting installed (on my ubuntu 16.04 it's in /usr/local/lib/cogutil.so). also a bunch of code just got changed from "cogutils" to "cogutil" for

Re: [opencog-dev] PartitionLink, biological pathways, human bodies, etc.

"last letters of the alphabet" >>> > MemberLink <0.9> >>> > ConceptNode "w" >>> > ConceptNode "last letters of the alphabet" >>> > MemberLink <0.8> >>> > ConceptNode &quo

Re: [opencog-dev] PartitionLink, biological pathways, human bodies, etc.

i actually think an AndLink-like semantics better fits biochemical pathways at a computationally tractable level than partitions in that below the level of a whole organism, where one pathway ends and another begins is largely arbitrary. also, if one link is missing then the whole thing

[opencog-dev] Re: OpenCog and Research Interest ---

it would be really useful to add some of the hrtool functionality to octool, like updating code from the repos or getting stable versions to play with different features. i'll add an issue on github. On Thursday, July 6, 2017 at 10:49:51 AM UTC-4, Joseph Horner wrote: > > I am a professional

[opencog-dev] Re: Building OpenCog Error

i don't think opencog dependencies have been figured out yet for ubuntu 16.04. try with 14.04. On Wednesday, June 14, 2017 at 1:59:52 PM UTC-4, karthi...@gmail.com wrote: > > Hello, I am using Ubuntu 16.04 docker container on a windows machine. > > On Tuesday, 13 June 2017 21:16:21 UTC-7,