Re: [Paraview] MacOSX Linking problems

2012-10-12 Thread Brickle Macho
I uninstalled HDF5 and it builds. Thanks for the help. Michael. -- On 12/10/12 9:02 AM, Pat Marion wrote: I think this is exactly the same problem that I've seen on all mac platforms where HDF5 is installed from macports. You can either uninstall hdf5 from macports, or you need to feed even

[Paraview] MacOSX Linking problems

2012-10-11 Thread Brickle Macho
Hi, I am trying to build ParaView on my MacBook and I am getting a list of undefined symbols. Below is the first of about 35+ similar errors. For info all of the required supporting packages were installed by Macports. I downloaded ParaView-3.14.1-Source from the website and created a

Re: [Paraview] MacOSX Linking problems

2012-10-11 Thread Pat Marion
It looks the compiler included system HDF5 headers even though VTK_USE_SYSTEM_HDF5 is disabled. Then, at link time it doesn't link the system HDF5 libraries because VTK_USE_SYSTEM_HDF5 if off. You could try running cmake in the build dir and setting VTK_USE_SYSTEM_HDF5 to OFF. I think this

Re: [Paraview] MacOSX Linking problems

2012-10-11 Thread Michael Jackson
Do you have HDF5 built for x86_64? The error is indicating that maybe your HDF5 is built for 32 bit intel or another arch (ppc). Are you trying to build a universal (32 bit/ 64 bit) ParaView? HDF5 will pretty much stop this from happening. Just my thoughts Mike On Oct 11, 2012, at 3:46 PM,

Re: [Paraview] MacOSX Linking problems

2012-10-11 Thread Pat Marion
Oops, I meant to say you should set VTK_USE_SYSTEM_HDF5 to ON. Pat On Thu, Oct 11, 2012 at 4:02 PM, Pat Marion pat.mar...@kitware.com wrote: It looks the compiler included system HDF5 headers even though VTK_USE_SYSTEM_HDF5 is disabled. Then, at link time it doesn't link the system HDF5

Re: [Paraview] MacOSX Linking problems

2012-10-11 Thread Brickle Macho
HDF5 was installed via Macports. I will try to find out what variant was installed.I did try the following -DCMAKE_OSX_ARCHITECTURES=386 and got the following error: -- Check size of unsigned long - failed CMake Error at /opt/local/share/cmake-2.8/Modules/TestBigEndian.cmake:44

Re: [Paraview] MacOSX Linking problems

2012-10-11 Thread Brickle Macho
Thanks to both for your quick response. From a clean/new build directory I tried your suggestion of -DVTK_USE_SYSTEM_HDF5=ON I received a different error (fragment below), which looks like it not finding some HDF5 headers. I will keep investigating. Obviously something strange about my

Re: [Paraview] MacOSX Linking problems

2012-10-11 Thread Michael Jackson
do a make VERBOSE=1 and you can see exactly what the compiler is being sent as far as -I include directories. I would say that something is missing either in your HDF5 installation, or an HDF5 include path is not being found. Doesn't VTK come with HDF5 at this point? Why not just let VTK build

Re: [Paraview] MacOSX Linking problems

2012-10-11 Thread Michael Jackson
That speaks to an issue with the environment being used to compile paraview. Uninstall HDF5 from MacPorts and use the one from VTK. This seems like the best course of action and is what I do here when I build my OS X versions of ParaView. I also build HDF5 for a few other projects so I got