[Paraview] PVBatch

2014-09-26 Thread Kharche, Sanjay
Dear All I am trying to visualise a series of VTK files using pvbatch and I get an error. I write VTK files with a header as ascii, and then data as a 32 bit int binary. I can visualise individual files. As there are many files, I would like to automate this process. To do so, I produce a pvsm

[Paraview] pvbatch

2017-10-30 Thread White, Judy
I am having problems using pvbatch on the LANL machines. It works fine on paraview/5.2.0, but can’t find pvbatch with paraview/5.4.0. I contacted the consultants at LANL, and they suggested that I send this problem to you. Any help or suggestions would be appreciated! Thanks – Judy White (505)

[Paraview] pvbatch

2017-11-12 Thread Scott, W Alan
What are the magic cmake switches, for superbuild, that are used to build a non MPI, Mesa version of pvbatch? Where is this documented? Thanks, Alan ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/op

Re: [Paraview] PVBatch

2014-09-26 Thread David E DeMarle
> > FindSource("h0001.vtk").FileNames ='h%04d.vtk' % (i) > ... > AttributeError: 'NoneType' object has no attribute 'FileNames' Means that FindSource("h0001.vtk") returned none. Do a print GetSources() to see what it might be instead of "h0001.vtk". > Can you comment? > > thanks > Sanjay > >

Re: [Paraview] PVBatch

2014-09-26 Thread Kharche, Sanjay
Subject: Re: [Paraview] PVBatch FindSource("h0001.vtk").FileNames ='h%04d.vtk' % (i) ... AttributeError: 'NoneType' object has no attribute 'FileNames' Means that FindSource("h0001.vtk") returned none. Do a print GetSources() to see what it

Re: [Paraview] pvbatch

2017-10-30 Thread Utkarsh Ayachit
Seems like pvbatch is not in the path. Can you confirm that `module load paraview/5.4.0-osmesa` is indeed pointing to a valid PATH and that contains a `pvbatch` executable? Utkarsh On Mon, Oct 30, 2017 at 8:14 PM, White, Judy wrote: > I am having problems using pvbatch on the LANL machines. I

Re: [Paraview] pvbatch

2017-11-12 Thread Joachim Pouderoux
Alan, pvbatch and pvpython are both built as long as PARAVIEW_ENABLE_PYTHON is turned ON in its CMake. So for the superbuild, it is just requires to enable Python. For Mesa, you are supposed to enable Mesa (only supported on Linux for sure). To summarize: $ cmake -DENABLE_python=ON -DENABLE_mpi

Re: [Paraview] pvbatch

2017-11-13 Thread Ben Boeckel
On Sun, Nov 12, 2017 at 22:42:29 +, Scott, W Alan wrote: > What are the magic cmake switches, for superbuild, that are used to > build a non MPI, Mesa version of pvbatch? Where is this documented? pvpython is the non-MPI version of pvbatch. The superbuild docs could probably be improved here.

Re: [Paraview] pvbatch camera

2015-06-17 Thread Gabe Weymouth
Is there a way to set the default view to include all the data in batch mode? I can get this to work by calling Render() before writing an image, but I imagine there is a direct way to do this (perhaps with vtkCamera??). Thanks ___ Powered by www.kitware

[Paraview] pvbatch too verbatim?

2009-04-30 Thread Jean Favre
Hi folks when running pvbatch on time-dependent data and on many processors, the output becomes very verbatim since every proc writes messages similar to vtkCutter : [...] x 100 million times I end up with files of millions of lines which I do not read. I just look at the movies... Is t

[Paraview] pvbatch vs. pvpython

2012-08-08 Thread Ganesh Vijayakumar
hi! I recently installed paraview 3.12 with offscreen mesa on a SGI cluster with intel compilers and SGI MPT. Using the same version of paraview on my local computer I recorded a script in the qt version using python trace. I was able to execute the same script just fine on the cluster on a simi

[Paraview] pvbatch, Render, WriteImage

2013-01-15 Thread Glockner Stéphane
Hello, I try to use paraview 3.98 (Linux 64b, binary package) in batch mode with pvbatch (or pvpython) to load a .pvsm file, render it and write a png image. The problem is that the png image does not match the expected one. Rotation and zoom are not applied. In the render window, the image app

[Paraview] pvbatch MPI error

2013-03-18 Thread Anton Shterenlikht
This script: from paraview.simple import * #Connect() reader=ImageReader(FilePrefix="z.raw") reader.DataByteOrder=1 reader.DataExtent=[1,40,1,40,1,40] reader.DataScalarType=6 view = GetActiveView() if not view: view = CreateRenderView() view.ViewSize=[600,600] Show() dp = GetDisplayProperties(

[Paraview] pvbatch rendering issue

2017-07-03 Thread Maxim Torgonskiy
Hello, I need to load a heavy pvsm state with pvbatch and render multiple output views for my regression tests. The python script which I use is quite straightforward: import paraview.simple as ParaViewSimple import os ... ParaViewSimple.servermanager.LoadState(pvsm_file) for view in ParaViewSimp

Re: [Paraview] pvbatch view size

2012-06-23 Thread Utkarsh Ayachit
Burlen, How are you setting the view size in your python script for pvbatch? Utkarsh On Fri, Jun 22, 2012 at 4:27 PM, burlen wrote: > Hi all, > > When I'm using pvbatch the rendering gets "clipped" (see attached images) > when I set the view size to values greater than ~1024 in either direction

Re: [Paraview] pvbatch view size

2012-06-25 Thread Burlen Loring
cc'ing list On 06/23/2012 01:38 PM, Burlen Loring wrote: hi Utkarsh, i'm setting as follows: view = GetRenderView() view.ViewSize = [width, height] On Jun 23, 2012 6:35 AM, "Utkarsh Ayachit" mailto:utkarsh.ayac...@kitware.com>> wrote: Burlen, How are you setting the view size in y

Re: [Paraview] pvbatch view size

2012-06-25 Thread Burlen Loring
Thanks Utkarsh, I'm using 3.14.1 now but this also happens with 3.10.0. Setting the window position didn't help. Burlen On 06/24/2012 06:13 AM, Utkarsh Ayachit wrote: Burlen, This is with 3.14 or greater right? Another thing to try is setting teh window position (maybe it's being shown up

Re: [Paraview] pvbatch view size

2012-06-25 Thread Utkarsh Ayachit
Is it at all possible to view the batch render windows on the processes? I am not sure, but maybe looking at the actual size/pos of the windows can provide some clues. Theoretically, I don't see why there should be any difference between pvbatch and pvserver (which I assume is what you mean by "in

Re: [Paraview] pvbatch view size

2012-06-26 Thread Burlen Loring
unfortunately I'm running this on a vis cluster, I don't see the windows. I guess I can move one slice of the dataset to my workstation and see if the issue remains... On 06/25/2012 04:36 PM, Utkarsh Ayachit wrote: Is it at all possible to view the batch render windows on the processes? I am

Re: [Paraview] pvbatch view size

2012-06-26 Thread Utkarsh Ayachit
Sorry I don't have any insight. The 1024 limit sounds very fishy. In the end, it has to be something with X/OpenGL context or something like that, but what is confusing is that it works with pvserver (remote-rendering, right?). Utkarsh On Tue, Jun 26, 2012 at 10:40 AM, Burlen Loring wrote: > unf

Re: [Paraview] pvbatch view size

2012-06-26 Thread Utkarsh Ayachit
O another thing, try turning off "UseOffscreenRenderingForScreenshots" property on the view. > view.UseOffscreenRenderingForScreenshots = 0 That's one difference between the client-server and pvbatch workflows. Utkarsh On Tue, Jun 26, 2012 at 10:40 AM, Utkarsh Ayachit wrote: > Sorry I don't ha

Re: [Paraview] pvbatch view size

2012-06-26 Thread Burlen Loring
No luck there. I have had it set to 0 all along, but setting to 1 doesn't help. I initially suspected the xorg config, but xrandr command confirms that the display supports the higher resolutions. Yes, it works with pvserver remote rendering. On 06/26/2012 07:41 AM, Utkarsh Ayachit wrote: O a

Re: [Paraview] pvbatch too verbatim?

2009-04-30 Thread Utkarsh Ayachit
Indeed use: servermanager.ToggleProgressPrinting() On Thu, Apr 30, 2009 at 4:08 PM, Jean Favre wrote: > Hi folks > > when running pvbatch on time-dependent data and on many processors, the > output becomes very verbatim since every proc writes messages similar to > > vtkCutter : [...] x 100

[Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Carrie E. Spear (Cont, CISD/ARL)
Good Morning, I am currently having issues with paraview-3.8.0 and paraview-3.9.0 when trying to use pvbatch and offscreen rendering. When I run with my DISPLAY variable set, I don't have any issues, when the DISPLAY variable is not set it fails with the "cannot connect to X server error". I h

[Paraview] pvbatch and save data

2011-02-12 Thread bastil2...@yahoo.de
Hi all, I have written a python-script to interpolate data from one geometry to another and save the result. Running it in serial works fine with pvbatch. In parallel I have no working writer so far. I tried it with vtk, pvd (mpi errors) and ensight (data written half, no blocks found). Is there s

Re: [Paraview] pvbatch vs. pvpython

2012-08-08 Thread Burlen Loring
Hi Ganesh, Sig 9 usually means your job was killed by the system. Is it possible that you have exhausted the available ram or hit some artificial limit that is imposed by your batch system? Burlen On 08/08/2012 01:15 PM, Ganesh Vijayakumar wrote: hi! I recently installed paraview 3.12 wi

Re: [Paraview] pvbatch vs. pvpython

2012-08-08 Thread Ganesh Vijayakumar
On Wed, Aug 8, 2012 at 5:02 PM, Burlen Loring wrote: > ** > Hi Ganesh, > > Sig 9 usually means your job was killed by the system. Is it possible that > you have exhausted the available ram or hit some artificial limit that is > imposed by your batch system? > > I can't think of any right away. Th

Re: [Paraview] pvbatch vs. pvpython

2012-08-08 Thread Burlen Loring
assuming that you've already examined all the output, and there's no other info, you could do a couple of things: put some print statements in your python script to see how far it makes it. Also you could use MPT specific environment variables that tell mpt to print a stack trace, see man mpi.

Re: [Paraview] pvbatch vs. pvpython

2012-08-09 Thread Ganesh Vijayakumar
On Wed, Aug 8, 2012 at 5:25 PM, Burlen Loring wrote: > ** > assuming that you've already examined all the output, and there's no other > info, you could do a couple of things: put some print statements in your > python script to see how far it makes it. Also you could use MPT specific > environme

Re: [Paraview] pvbatch vs. pvpython

2012-08-09 Thread David E DeMarle
On Thu, Aug 9, 2012 at 10:47 AM, Ganesh Vijayakumar wrote: > snip > But in the meanwhile can I force a debug compilation? How can I do that? > Just add "-g" to CMAKE_C_FLAGS and CMAKE_CXX_FLAGS? CMAKE_BUILD_TYPE = Debug ___ Powered by www.kitware.com

Re: [Paraview] pvbatch vs. pvpython

2012-08-09 Thread Burlen Loring
this sounds more and more external to pv. For example if you compiled your program with one version of mpi but tried to run it with another, you'd very likely see exactly what you are seeing here. A few of things you could look at to boost your confidence: "module list", "which mpirun", "echo $

Re: [Paraview] pvbatch vs. pvpython

2012-08-09 Thread Burlen Loring
attached an example of how we configure the environment and launch pvbatch on nautilus sgi uv 1000. On 08/09/2012 09:20 AM, Burlen Loring wrote: this sounds more and more external to pv. For example if you compiled your program with one version of mpi but tried to run it with another, you'd ve

Re: [Paraview] pvbatch, Render, WriteImage

2013-01-16 Thread Utkarsh Ayachit
Try calling the following at the start of the script: from paraview.simple import * paraview.simple._DisableFirstRenderCameraReset() Utkarsh On Tue, Jan 15, 2013 at 4:57 PM, Glockner Stéphane wrote: > Hello, > > I try to use paraview 3.98 (Linux 64b, binary package) in batch mode with > pvbatc

[Paraview] pvbatch and process id

2013-02-04 Thread Gena Bug
Hi! I'm trying to get a current process id from within a pvbatch script. I found a solution here (http://www.paraview.org/pipermail/paraview/2010-April/016759.html) but this trick doesn't work for me. I wrote a very simple script: from paraview.simple import * sm = servermanager print 'parts = ',

Re: [Paraview] pvbatch MPI error

2013-03-18 Thread Utkarsh Ayachit
What is the version of ParaView on the "other" Linux box? How are you running the script? Is the mpi used to build and run the executable same? Utkarsh On Mon, Mar 18, 2013 at 7:28 PM, Anton Shterenlikht wrote: > This script: > > from paraview.simple import * > #Connect() > reader=ImageReader(Fi

Re: [Paraview] pvbatch MPI error

2013-03-19 Thread Anton Shterenlikht
From utkarsh.ayac...@kitware.com Tue Mar 19 03:30:31 2013 What is the version of ParaView on the "other" Linux box? 3.12: mexas@hector-xe6-8:~> pvpython Python 2.7.2 (default, Nov 9 2011, 15:37:53) [GCC 4.1.2 20061115 (prerelease) (Debian 4.1.1-21)] on linux2 Type "help", "copyr

Re: [Paraview] pvbatch MPI error

2013-03-19 Thread Anton Shterenlikht
From me...@bristol.ac.uk Tue Mar 19 09:10:58 2013 From utkarsh.ayac...@kitware.com Tue Mar 19 03:30:31 2013 What is the version of ParaView on the "other" Linux box? 3.12: mexas@hector-xe6-8:~> pvpython Python 2.7.2 (default, Nov

Re: [Paraview] pvbatch rendering issue

2017-07-03 Thread Utkarsh Ayachit
Maxim, Can you try passing `--use-offscreen-rendering` flag to pvbatch. Does that help? I am not sure how you're getting incorrect sizes with osmesa too, but let's focus of the X error to begin with. Utkarsh On Mon, Jul 3, 2017 at 11:36 AM, Maxim Torgonskiy wrote: > Hello, > > I need to load a

[Paraview] pvbatch: Python Loop-memory leak

2012-01-24 Thread Houskamp, Joshua R CTR (US)
I am attempting to setup a pvbatch process for a large number of exodus files using WriteAnimation for images. However, I appear to have a memory leak and the number of images continues to grow. I've been trying to delete all the variables to find an offending variable that is carrying over time

[Paraview] Clarification on Paraview pvbatch run

2014-06-05 Thread Daniele Obiso
Hi All, i'm writing here because i would understand better the functionality of pvbatch in Paraview. At moment i'm able to run Paraview in batch launching a python script, and it works good. Here the line command i launch: _//software/Paraview/ParaView-3.12.0-Linux-x86_64/lib/paraview-3.12/

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Utkarsh Ayachit
That sounds fishy, let me take a look. I'll get back to you. Utkarsh On Wed, Apr 7, 2010 at 8:06 AM, Carrie E. Spear (Cont, CISD/ARL) wrote: > Good Morning, > > I am currently having issues with paraview-3.8.0 and paraview-3.9.0 when > trying to use pvbatch and offscreen rendering. When I run wi

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Utkarsh Ayachit
Carrie, I just tried it with CVS ParaView and I could not reproduce it. Can you reproduce this when running on a single node? Try running ldd on pvbatch, is it getting the right OpenGL libraries? Utkarsh On Wed, Apr 7, 2010 at 9:40 AM, Utkarsh Ayachit wrote: > That sounds fishy, let me take a l

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Carrie E. Spear (Cont, CISD/ARL)
Utkarsh, When I do an ldd pvbatch appears to be using the correct libraries GL libraries (I am building agains mesa-7.0.4, could it be that my version of mesa is too old). I ran the following test: bash-3.2$ echo $DISPLAY :0.0 bash-3.2$ unset DISPLAY bash-3.2$ echo $DISPLAY bash-3.2$ mpirun

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Utkarsh Ayachit
That's exactly what I am doing as well ("unset DISPLAY" that is), and seems to work well. Is this a debug build. Can you track down where the error message is coming from? I am not sure where this error message is coming from since it doesn't look like a paraview message and a quick "grep" didn't

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Rick Angelini
So, we're really stumped. - Paraview (pvbatch) 3.6.2 works exactly as we'd expect. - pvbatch 3.8.0/3.9.0 fail with the "can't open display" error. If we set a display variable, pvbatch works, but that's not really a solution. - All three are using the same exact

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Utkarsh Ayachit
elini wrote: > So, we're really stumped. > > - Paraview (pvbatch) 3.6.2 works exactly as we'd expect. > - pvbatch 3.8.0/3.9.0 fail with the "can't open display" error.  If we set a > display variable, pvbatch works, but that's not really a solution. >

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Utkarsh Ayachit
ni > wrote: >> So, we're really stumped. >> >> - Paraview (pvbatch) 3.6.2 works exactly as we'd expect. >> - pvbatch 3.8.0/3.9.0 fail with the "can't open display" error.  If we set a >> display variable, pvbatch works, but that's not re

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Utkarsh Ayachit
>> PARAVIEW_BUILD_QT_GUI ON? That's possible the only difference between >> your build and mine. I am going to turn on PARAVIEW_BUILD_QT_GUI and >> try to reproduce the problem. >> >> Utkarsh >> >> >> >> >> >> On Wed, Apr 7, 2010

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-07 Thread Dave Partyka
> >> Utkarsh > >> > >> > >> > >> > >> > >> On Wed, Apr 7, 2010 at 2:06 PM, Rick Angelini < > rick.angel...@us.army.mil> wrote: > >>> So, we're really stumped. > >>> > >>> - Paraview (pvba

Re: [Paraview] pvbatch offscreen rendering problems

2010-04-08 Thread Rick Angelini
e: So, we're really stumped. - Paraview (pvbatch) 3.6.2 works exactly as we'd expect. - pvbatch 3.8.0/3.9.0 fail with the "can't open display" error. If we set a display variable, pvbatch works, but that's not really a solution. - All three are using the same

[Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-27 Thread Jens
Hi, I try to use pvbatch to render a whole bunch of screenshots using a script. pvbatch works fine if I simply create a sphere and write that image to disk. But loading a predefined pipeline using LoadState('pstate.pvsm') which includes a datset in XDMF file format fails. Any idea what I am doin

[Paraview] Pvbatch with XDMF/HDF5 limitation

2011-02-21 Thread Jorge Chiva Segura
Hi anybody, I am trying to run a very simple python script: from paraview.simple import * servermanager.LoadState("state.pvsm") view = servermanager.GetRenderView() view.StillRender() image="aux.png" view.WriteImage(image,"vtkPNGWriter",1) using pvbatch: mpirun -np 8 pvbatch script.py to obtai

[Paraview] Pvbatch launches preview when rendering

2012-08-24 Thread Joe Borġ
Is there anyway to turn this off? Regards, Joseph David Borġ http://www.jdborg.com ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check th

Re: [Paraview] pvbatch and process id

2013-02-04 Thread Andy Bauer
Hi Gena, You'll need to run pvbatch with the --symmetric option. Otherwise process 0 is the only one that reads the script and tells all of the other processes what to do. Andy On Mon, Feb 4, 2013 at 9:35 AM, Gena Bug wrote: > Hi! > > I'm trying to get a current process id from within a pvbatc

[Paraview] pvbatch hangs when enabling OSPRay

2016-08-04 Thread Benjamín Hernández
Hello, I've compiled Paraview 5.1 with multithreaded mpi and ospray (with OpenMP) support using the next modules: 1) gcc/4.8.25) xalt/0.5.3 9) szip/2.1 13) boost/1.61.0 2) openmpi/1.8.4_mtm6) DefApps 10) hdf5/1.8.11 14) libtool/2.4.2 3) PE-gnu/4.8.2-1

Re: [Paraview] pvbatch: Python Loop-memory leak

2012-01-24 Thread Paul Edwards
This sounds like the mesa issue I was having. Does it work if you add this to the start pdf your script? # turn off display lists g = servermanager.misc.GlobalMapperProperties() g.GlobalImmediateModeRendering = 1 Regards, Paul On 24 Jan 2012 19:07, "Houskamp, Joshua R CTR (US)" < joshua.r.houska

Re: [Paraview] Clarification on Paraview pvbatch run

2014-06-05 Thread Sebastien Jourdain
Hi Daniele, can you share what your script look like? Seb On Thu, Jun 5, 2014 at 1:56 AM, Daniele Obiso < daniele.ob...@phitecingegneria.it> wrote: > Hi All, > > i'm writing here because i would understand better the functionality of > pvbatch in Paraview. > > At moment i'm able to run Parav

Re: [Paraview] Clarification on Paraview pvbatch run

2014-06-05 Thread Daniele Obiso
Hi Sebastien, thanks for the reply! The script is about creating slice and sweep animation. But it's working fine, i think there is no problem in it. Do you need the script to understand something about the parallelization? Let me know! Daniele On 06/05/2014 04:17 PM, Sebastien Jourdain w

Re: [Paraview] Clarification on Paraview pvbatch run

2014-06-05 Thread Sebastien Jourdain
Is it using the VTK classes or the paraview Proxy? Moreover, the reader/source is responsible to distribute the data to properly handle parallelism. If it does not, then you right, everything will happen on the root node. Hense a quick look at the script can help us determine which part need to c

Re: [Paraview] Clarification on Paraview pvbatch run

2014-06-05 Thread Daniele Obiso
Hi Sebastien, here you can find the main parts of the script. /try: paraview.simple// //except: from paraview.simple import *// //paraview.simple._DisableFirstRenderC

Re: [Paraview] Clarification on Paraview pvbatch run

2014-06-05 Thread Sebastien Jourdain
Ok, so you are correctly using everything. The question is now on the *OpenFOAMReader and if it properly use MPI to read and distribute the data.* *Which unfortunately I don't know.* *If you want to force a redistribution of your data across your nodes, you can use the D3 filter just after your re

Re: [Paraview] Clarification on Paraview pvbatch run

2014-06-06 Thread David E DeMarle
The FOAM reader should read the data in parallel. Try changing the CaseType property from Reconstructed (meaning OpenFOAM did the gather) to Decomposed (meaning OpenFOAM left the data as the parallel nodes in the simulation wrote them) case and see if that helps. David E DeMarle Kitware, Inc. R&D

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-27 Thread Utkarsh Ayachit
Jens Here's an updated script: = from paraview.simple import * # reload state servermanager.LoadState('/tmp/state.pvsm') view = GetRenderViews()[0] ## render png view.ResetCamera() view.StillRender() view.WriteImage( "/tmp/Test1.png", "vtkPNGWriter" ) == The pr

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-28 Thread Jens
Hi Utkarsh, thank you for that hint. I can see the bounding box now ... But somehow it does not refresh the whole pipeline. What do I have to do, that all parts of pipeline are updated before I write the image. Any idea? Greetings Jens Utkarsh Ayachit schrieb: > Jens > > Here's an updated scri

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-28 Thread Utkarsh Ayachit
Jens, Is the non-refreshed part of the pipeline visible in the view? Utkarsh On Fri, May 28, 2010 at 3:23 AM, Jens wrote: > Hi Utkarsh, > > thank you for that hint. > I can see the bounding box now ... > > But somehow it does not refresh the whole pipeline. > What do I have to do, that all part

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-28 Thread Jens
Hi Utkarsh, if I reload the state in paraview-gui it does not refresh ether. I have to walk through the pipeline (bottom to top) and call "Apply". Greetings Jens Utkarsh Ayachit schrieb: > Jens, > > Is the non-refreshed part of the pipeline visible in the view? > > Utkarsh > > On Fri, May 28

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-28 Thread Utkarsh Ayachit
Jens, It would be great if you could post a state to reproduce this issue. Utkarsh On Fri, May 28, 2010 at 1:31 PM, Jens wrote: > Hi Utkarsh, > > if I reload the state in paraview-gui it does not refresh ether. > I have to walk through the pipeline (bottom to top) and call "Apply". > > Greeting

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-28 Thread Jens
Hi Utkarsh, The problem is related to bug 10775 (http://public.kitware.com/Bug/view.php?id=10775) and hyperslabs in XDMF. I attached an example which should reproduce the problems I discribe now: hyperslab on its own: pv 3.6.2: loading test.xmf->dataset u_without_hyperslab works fine pv 3.8.0: lo

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-28 Thread Utkarsh Ayachit
Jens, I'd recommend not relying on Xdmf state loading or Python API in 3.6 (or before) since that was broken. It has since been fixed for 3.8. I have requested the ARL/Xdmf folks to take a look at the hyperslab issue. I'll keep you posted. Once that segfault is fixed, state loading should not be a

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-29 Thread Kenji Takizawa
Dear Ken, and dear Utkarsh, I sent an email for the bug fix. But Kenneth applied it to different location. Instead of line 148 (which is in UpdateInformationFunction), it was applied to 172 (which is in UpdateInformationUniform). So I would like to inform you this again. I believe this issue is a

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-05-31 Thread Dave Partyka
Hi Ken, Kenji and Jens, I pulled the fix to UpdateInformationUniform that Ken committed into ParaView a few weeks ago. I just now also applied the fix to UpdateInformationFunction and pulled the change into ParaView as well. I apologize for some of the confusion. Since the transition to Git, Xdmf

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-06-14 Thread Jens
Hi, Miguel Fosas send an other patch assigne to the related bug http://www.itk.org/Bug/view.php?id=10775#c20932 Instead of "XdmfConstString Value=0;", he moves the variable in the case-section. Greetings Jens --- XdmfDataItem.cxx2010-06-07 18:11:50.954700131 +0200 +++ XdmfDataItem-patched.

Re: [Paraview] pvbatch + LoadState('..') +XDMF = empty image

2010-06-14 Thread Dave Partyka
Hi All, I have applied the new fix to Xdmf in commit cd802a3e4c0c13b4697518363535562f758a6d48 and updated ParaView to point to the latest Xdmf. Let me know if there are more problems. On Mon, Jun 14, 2010 at 9:13 AM, Jens wrote: > Hi, > > Miguel Fosas send an other patch assigne to the related b

[Paraview] pvbatch hanging in parallel after WriteImage?

2010-08-19 Thread Favre Jean
i am having difficulty with pvbatch - compiled with Mesa 7.6 - running in parallel and hanging after the first WriteImage in my python scripts. I have tested several compilations on different clusters, several MPI (mvapich and openmpi) and still cannot make this work. It writes the first image

Re: [Paraview] Pvbatch with XDMF/HDF5 limitation

2011-03-09 Thread Jorge Chiva Segura
Please, is it possible for someone to try to reproduce the behavior of which I am talking about with the example files submitted here: http://www.paraview.org/Bug/view.php?id=10702 ? If I try to open for example the file unsteady_output_probe_1.xdmf passing 1, 2, 4, 8 or 16 cpu's to mpirun when st

Re: [Paraview] Pvbatch with XDMF/HDF5 limitation

2011-03-10 Thread Robert Maynard
Hi Jorge, Can you please provide the CMakeCache.txt and the system information of the computer that has this problem? On Wed, Mar 9, 2011 at 11:44 AM, Jorge Chiva Segura wrote: > Please, is it possible for someone to try to reproduce the behavior of > which I am talking about with the example fi

Re: [Paraview] Pvbatch launches preview when rendering

2012-08-24 Thread Utkarsh Ayachit
Only way is to recompile PAraView with OSMesa (http://paraview.org/Wiki/ParaView_And_Mesa_3D) Utkarsh On Fri, Aug 24, 2012 at 12:08 PM, Joe Borġ wrote: > Is there anyway to turn this off? > > > Regards, > Joseph David Borġ > http://www.jdborg.com > > _

[Paraview] pvbatch, MPI and MultiBlock data sets

2013-01-15 Thread Yves Rogez
Hello, I'm trying to parallelize a process using pvbatch and MPI, with MultiBlock data set; thus using the vtk composite pipeline. I made a sample python program that is representative of what I have to do : --

[Paraview] pvbatch and readers with multiple outputs

2014-02-10 Thread Insley, Joseph A.
Hi, I have a custom reader plugin which has multiple outputs. From the GUI I can load up a data file, and can see the two outputs in the pipeline viewer. I can hide or show them independently, choose different representations, apply different filters, etc. I've saved a python state file, and

Re: [Paraview] pvbatch hangs when enabling OSPRay

2016-09-21 Thread David E DeMarle
Ben, I am not able to reproduce this locally. Can you file an issue to help me keep track of it on ParaView's new gitlab issue tracker? https://gitlab.kitware.com/paraview/paraview/issues David E DeMarle Kitware, Inc. R&D Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-49

Re: [Paraview] pvbatch hangs when enabling OSPRay

2016-09-22 Thread Benjamín Hernández
Sure Dave, I forget to mention I found no problems when running paraview GUI and ospray renderer in an interactive session in the cluster. Regards, On Wed, Sep 21, 2016 at 2:42 PM, David E DeMarle wrote: > Ben, > > I am not able to reproduce this locally. Can you file an issue to help me > ke

[Paraview] Pvbatch: Volume rendering a thresholded unstructured grid

2011-08-24 Thread Jesus Pulido
I am trying to volume render an unstructured grid of points using pvbatch but I am getting an error: ERROR: In /home/user/Programs/ParaView-3.11.1-git/ParaView/VTK/VolumeRendering/vtkUnstructuredGridVolumeRayCastMapper.cxx, line 211 vtkUnstructuredGridVolumeRayCastMapper (0x2473a40): Can't use the

[Paraview] Pvbatch: Volume rendering a thresholded unstructured grid

2011-08-29 Thread Jesus Pulido
I omitted that line before because I was getting the following error. Readding it gives this error: Traceback (most recent call last): File "/home/user/DNS/volume.py", line 40, in DataRepresentation2.ColorArrayName = 'volume_scalars' File "/home/user/Programs/ParaView-3.11.1-git/bin/Utilit

[Paraview] pvbatch: python - help make animation window bigger

2014-07-24 Thread Anton Shterenlikht
I've recorded this python script with PV Trace. However, the resulting animation window is small. What do I need to edit to make the window, e.g. 1000x1000 pixels? Thanks Anton # use defined variables, no indent allowed, start at col 1 infile = "z.xdmf" # name of XDMF file picfile = "z.png"

[Paraview] Pvbatch not performing significantly better in parallel

2015-04-18 Thread Massimiliano Leoni
Hi everybody, I am trying to run pvbatch in parallel to render an animation, with a very easy script that looks like * import sys * from paraview.simple import * * * # read pvsm file from command line and load it * stateFile = sys.argv[1] * simulation = state

[Paraview] pvbatch, get dataset of output port > 0

2008-09-01 Thread Burlen Loring
Hi all, I have a pvbatch script from which I would like to get the output data set of the second output port of a filter which has 2 output ports. How can I do this? -- Burlen Loring Kitware, Inc. R&D Engineer 28 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-371-3971 x137 __

[Paraview] pvbatch vs python shell (3.6.1): pvbatch crashes

2009-10-20 Thread Jonathan Dursi
Hi: I'm just starting to try to learn the python scripting interface to ParaView 3.6.1, taking bits and pieces from various tutorial slides scattered over the web. I've managed to put together something that works fine in the python shell on the client side, but when I try using the same sc

Re: [Paraview] pvbatch hanging in parallel after WriteImage?

2010-08-19 Thread Eric E. Monson
Hey Jean, I am getting the same behavior on my Mac OS X 10.6 compiled with OpenMPI (but no OSMesa). I can run scripts like yours from the ParaView Python shell when connected to a four-process pvserver just fine, and it works from the same build of pvbatch run in serial (without mpirun), but wh

Re: [Paraview] pvbatch hanging in parallel after WriteImage?

2010-08-19 Thread pat marion
I can repeat this. Believe it or not, WriteImage does an mpi broadcast. In the 3.8 release and some time afterward it worked fine, but it doesn't seem to work now. Pat On Thu, Aug 19, 2010 at 5:09 PM, Eric E. Monson wrote: > Hey Jean, > > I am getting the same behavior on my Mac OS X 10.6 com

Re: [Paraview] pvbatch hanging in parallel after WriteImage?

2010-08-19 Thread pat marion
I think it may have been buggy ever since the mpi broadcast was added, but a month and a half ago Utkarsh added a debugging call to Barrier to expose to help expose these issues. I'll fix. Pat On Thu, Aug 19, 2010 at 5:12 PM, pat marion wrote: > I can repeat this. Believe it or not, WriteImag

Re: [Paraview] pvbatch hanging in parallel after WriteImage?

2010-08-19 Thread pat marion
In the meantime, you can fix it by replacing the body of vtkSMUtilities::SaveImageOnProcessZero with: return SaveImage(image, filename, writerName); Pat On Thu, Aug 19, 2010 at 5:22 PM, pat marion wrote: > I think it may have been buggy ever since the mpi broadcast was added, but > a month a

Re: [Paraview] pvbatch hanging in parallel after WriteImage?

2010-08-19 Thread pat marion
Attached is a patch that fixes the problem. I'm cc'ing Ken because he is the one who originally introduced the mpi broadcast in commit e9096f4 (then I moved the routine to vtkSMUtilities in commit 514322c) I want to make sure this new patch continues to work for his use case. Pat On Thu, Aug 19

Re: [Paraview] pvbatch hanging in parallel after WriteImage?

2010-10-18 Thread Utkarsh Ayachit
This show be fixed now. commit e13270b7468f7fcdea21a7e350c3ce65a9cde872 Author: Utkarsh Ayachit Date: Mon Oct 18 10:11:34 2010 -0400 BUG #11327. Fixed freeze after WriteImage in parallel pvbatch. vtkSMUtilities::SaveImageOnProcessZero has a broadcast to ensure that all processes h

Re: [Paraview] pvbatch, MPI and MultiBlock data sets

2013-01-15 Thread Utkarsh Ayachit
Just to make sure, your ParaView is built with MPI support enabled, right? XMLMultiBlockDataReader does distribute the blocks to read among the processes. Try apply a "ProcessIdScalars" filter in the middle and then look at the ProcessId assigned to the blocks in the data. They should show how the

Re: [Paraview] pvbatch, MPI and MultiBlock data sets

2013-01-28 Thread Yves Rogez
Any idea on this problem ? Thanks, Yves Rogez *IPAG* /Institut de Planétologie et d'Astrophysique de Grenoble / Bat D de Physique - BP. 53 - 38041 Grenoble - FRANCE tel : +33 (0)4 76 63 52 80 lab : +33 (0)4 76 63 52 89 Le 15/01/2013 17:25, Yves Rogez a écrit : And also the output file for MPI

Re: [Paraview] pvbatch, MPI and MultiBlock data sets

2013-01-29 Thread Utkarsh Ayachit
Yves, 1. I don't see the oddity with the block number and BlockID when running in parallel, as you describe. For me, the BlockID in indeed Index for block + 1 whether I run in parlalel or not. 2. Running your python script as a single process, I get 1:18 minutes, while in parallel (2 procs), I get

Re: [Paraview] pvbatch, MPI and MultiBlock data sets

2013-02-04 Thread Yves Rogez
Hi, I found a solution to this problem. I had to insert an UpdatePipeline() call just before the writer update : /myLastFilter.UpdatePipeline() writer.UpdatePipeline()/ This is a strange behavior. Maybe due to MPICH2 usage ? I don't know... However it runs well like that. Thanks for

Re: [Paraview] pvbatch, MPI and MultiBlock data sets

2013-02-04 Thread Utkarsh Ayachit
Actually this was bug that fix just a couple of days ago: http://paraview.org/Bug/view.php?id=13850 It should be fixed in the upcoming release (3.98.2). Utkarsh On Mon, Feb 4, 2013 at 4:05 PM, Yves Rogez wrote: > Hi, > > I found a solution to this problem. I had to insert an UpdatePipeline() cal

Re: [Paraview] pvbatch and readers with multiple outputs

2014-02-11 Thread Utkarsh Ayachit
Joe, Something like following should do the trick: from paraview.simple import * > port = servermanager.OutputPort(reader, 1) > Show(port) On Mon, Feb 10, 2014 at 4:37 PM, Insley, Joseph A. wrote: > Hi, > > I have a custom reader plugin which has multiple outputs. From the GUI I can >

Re: [Paraview] Pvbatch: Volume rendering a thresholded unstructured grid

2011-08-29 Thread Utkarsh Ayachit
Try adding: DataRepresentation2.ColorArrayName = 'volume_scalars' Utkarsh On Wed, Aug 24, 2011 at 7:02 PM, Jesus Pulido wrote: > I am trying to volume render an unstructured grid of points using pvbatch > but I am getting an error: > > ERROR: In > /home/user/Programs/ParaView-3.11.1-git/ParaVie

  1   2   >