Re: drug side effects

2009-05-05 Thread Peter Ansell
2009/5/6 Kei Cheung : > Matthias Samwald wrote: > >> I have also started to convert SIDER into aTags, but our two conversions >> will be complementary. What I am doing is mapping the information to the OBO >> disease ontology and to DBpedia (for drug names), and reusing OBO and >> DBpedia URIs dire

Re: drug side effects

2009-05-05 Thread Kei Cheung
Matthias Samwald wrote: I have also started to convert SIDER into aTags, but our two conversions will be complementary. What I am doing is mapping the information to the OBO disease ontology and to DBpedia (for drug names), and reusing OBO and DBpedia URIs directly. The conversion will be los

Re: [lodd][biordf] New release of the TCM dataset

2009-05-05 Thread Kei Cheung
Thanks for the effort, Jun. I wonder how many of the herbs in the TCM dataset intersect with those listed on the following wikipedia page: http://en.wikipedia.org/wiki/Chinese_herbal_medicine. We may be able to get additional information about the herbs from wikipedia/dbpedia ... Cheers, -K

BioPortal 2.1 Release

2009-05-05 Thread Trish Whetzel
The National Center for Biomedical Ontology is pleased to announce the release of BioPortal 2.1. Highlights of this release are: -*Annotator*: a service that identifies mentions of biomedical ontology concepts in text that users submit. You can use the annotator service to tag automatically any it

[COI] Clinical Observations Interoperability Telcon, Tues., May 12, 11:00am -12:00pm US EDT

2009-05-05 Thread Kashyap, Vipul B8MM
Tues., May 12, 11:00am -12:00pm US EDT Phone +1 617 761 6200, conference 4257 (" HCLS ") IRC irc://irc.w3.org:6665/hcls Browser-based IRC client: http://www.w3.org/2001/01/cgi-irc OR http://ircatwork.com

Re: [lodd][biordf] New release of the TCM dataset

2009-05-05 Thread Kingsley Idehen
Jun Zhao wrote: Kingsley Idehen wrote: Jun Zhao wrote: Dear all, I have created a new release of the TCM dataset. The RDF dump can be downloaded at [1]. In this release, I have: * Updated URIs in the dataset with a new domain name: http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw * Up

Re: [lodd][biordf] New release of the TCM dataset

2009-05-05 Thread Jun Zhao
Kingsley Idehen wrote: Jun Zhao wrote: Dear all, I have created a new release of the TCM dataset. The RDF dump can be downloaded at [1]. In this release, I have: * Updated URIs in the dataset with a new domain name: http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw * Updated the dataset

Re: [lodd][biordf] New release of the TCM dataset

2009-05-05 Thread Kingsley Idehen
Jun Zhao wrote: Dear all, I have created a new release of the TCM dataset. The RDF dump can be downloaded at [1]. In this release, I have: * Updated URIs in the dataset with a new domain name: http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw * Updated the dataset with the statistic conf

[lodd][biordf] New release of the TCM dataset

2009-05-05 Thread Jun Zhao
Dear all, I have created a new release of the TCM dataset. The RDF dump can be downloaded at [1]. In this release, I have: * Updated URIs in the dataset with a new domain name: http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw * Updated the dataset with the statistic confidence value of the

RE: Is a Protein an Object Aggregate?

2009-05-05 Thread Colin Batchelor
Oliver Ruebenacker asks: > Consider: (a) Protein in BioPAX Level 2 (b) Protein in the Protein > Ontology (c) A class protein how it is usually understood by > biologists. > > Is it a sub class of BFO's object aggregate? Or of BFO's object? Or what > else? I've been caught out by this sort of