mdmiller wrote:
hi all,
the MAGE-TAB also can have (and often does) good phenotypic
information on the sources (patients, mice, etc) of the samples used
plus the experimental factors.
I think it's also important for EFO to be harmonized with existing
ontologies like the one in NCBO.
Cheers
Hi Lena et al,
When you said data structure, did you mean the RDF structure. If so, is
a pointer to the structure that we can look at?
As discussed during yesterday's call, Jun and Satya will help create a
wiki page for listing some of the requirements for provenance/workflow
in the context
Hi Misha and All,
I believe there is a complementary relationship between paper-based gene
lists and the gene lists produced by Atlas. Different methods may
produce different lists of genes (there should be some overlap though)
for the same experiment. It's good to consider the possibility of
Hi Michael et al,
Thanks for pointing out the kind of metadata captured in MAGE-TAB. Yes,
we have discussed what kind of semantic information might be needed for
describing gene lists. In addition to recording how the gene lists were
obtained, we might need to keep track of how these gene list
hi all,
the MAGE-TAB also can have (and often does) good phenotypic information on the
sources (patients, mice, etc) of the samples used plus the experimental factors.
it does typically have the method to process from the raw to the processed data
but what i meant was the information on how the
Hi all,
I apologize for missing the call yesterday! It seems you had a pretty
interesting discussion! :-)
If I understand Michael's statement, parsing the MAGE-TAB/MAGE-ML into RDF
would result in obtaining only the raw and processed data files but not the
mechanism used to process it nor the resu
hi all,
(from the minutes)
"Yolanda/Kei/Scott: semantic annotation/description of workflow would enable
the retrieval of data relevant to that workflow (i.e. data that could be
used to populate that workflow for a different experimental scenario)"
what is typically in a MAGE-TAB/MAGE-ML docu
