Re: Survey on guidelines for the Minimal reporting for an Ontology

eview what we get as feedback and revise the MIRO > guidelines appropriately. We will also publish a summary of the responses to > the survey and what we plan to do in response. > > We appreciate your help and feedback! > > Robert Stevens (1), James Malone (2) and Chris Mungal

SWAT4LS Registration closes 1st December

Semantic Web Applications and Tools for the Life Sciences (SWAT4LS) Conference 2015, Cambridge, UK. http://www.swat4ls.org/workshops/cambridge2015/ Registration closes on *Tuesday 1st December*. The registration page is found at: http://www.swat4

SWAT4LS Early Bird registration ends Monday 26th

Semantic Web Applications and Tools for the Life Sciences (SWAT4LS) Conference 2015, Cambridge, UK. http://www.swat4ls.org/workshops/cambridge2015/ Reminder: Early bird discount ending soon Discounted ‘early bird’ registration ends on *Monday, 26th October*. The registration page is found at: ht

SWAT4LS - Early bird registration now open

he SWAT4LS organising committee are: General Chair: Andrea Splendiani Scientific Chairs: Robert Stevens and James Malone Local Chair: James Malone and Helen Parkinson Industry Chair: Kerstin Forsberg Hackathon Chair: Simon Jupp Tutorial Chair: M. Scott Marshall

Reminder: CFP Semantic Web Applications and Tools for Life Sciences (SWAT4LS) 2015, Cambridge, UK

nferences/?conf=swat4ls2015>. All details found via http://www.swat4ls.org/workshops/cambridge2015/ <http://www.swat4ls.org/workshops/cambridge2015/> Robert Stevens and James Malone - Scientific Chairs SWAT4LS 2015 Andrea Splendiani, General Chair M Scott Marshall, Adrian Paschke, Alb

[bioportal-announce] CFP: Semantic Web Applications and Tools for Life Sciences (SWAT4LS) 2015

nferences/?conf=swat4ls2015>. All details found via http://www.swat4ls.org/workshops/cambridge2015/ <http://www.swat4ls.org/workshops/cambridge2015/> Robert Stevens and James Malone - Scientific Chairs SWAT4LS 2015 Andrea Splendiani, M Scott Marshall, Adrian Paschke, Albert Burger, Paolo Rom

Registration now open: 1st European Ontology Network Workshop

Registration now open for 1st European Ontology Network Workshop 25th September, 2014, De Meervaart Conference Centre, Amsterdam, The Netherlands http://www.eudat.eu/euon/euon-2014-workshop You are also free to attend the EUDAT conference (starting day before) EUON Guest Speakers Prof Robert St

EUON Semantics and more: Deadline 7th July

Due to multiple requests the deadline for submission of abstracts to the European Ontology Network workshop will be extended by one week to Monday 7th July. Thanks to all those that have already submitted. EUON will be free to attend - registration will open soon. Call for abstracts and submissi

EUON Workshop: Submission Deadline 30th June

September 2014 Submission Process The maximum length for abstracts is 350 words. Please submit using the following EasyChair link: https://www.easychair.org/conferences/?conf=euon2014 Join EUON Please visit www.euon.org to join the network. — James Malone, PhD Lead Ontologist Blog: http

[bioportal-announce] 1st European Ontology Network Workshop: call for abstracts

Dear Colleagues, We are pleased to announce the first workshop organized by the European Ontology Network (EUON). This event will take place on September 25th, 2014 in Amsterdam back to back with the Research Data Alliance 4th Plenary meeting (22-24 Sept) and 3rd EUDAT conference (25-26 Sept).

Re: Announcing the EBI RDF Platform

http://www.ebi.ac.uk/rdf Apparently an extra full stop made it's way into the link ;) On 08/10/2013 14:40, James Malone wrote: Colleagues, Today, we officially launched the EBI RDF Platform http://w.ww.ebi.ac.uk/rdf The new platform, built in response to input from industry, pro

Announcing the EBI RDF Platform

Press release: http://www.ebi.ac.uk/about/news/press-releases/RDF-platform My own informal thought are here: http://drjamesmalone.blogspot.co.uk/2013/10/announcing-ebi-rdf-platform-but-what.html -- James Malone, PhD Blog: http://drjamesmalone.blogspot.co.uk/ Twitter: https://twitter.com

Re: Wow....

Yeah... good luck to them with all that. They might have been better spending their $5000 at Disney World; at least in there fantasy is welcomed. On 05/02/2013 11:02, RebholzSchuhmann wrote: You may want to have a look at this one too: http://www.freepatentsonline.com/y2009/0259459.html -

Fwd: [bioportal-announce] NCBO Spring Developer Events

Ontologies* will take place on April 18-19, 2013. This course will be taught by a team from EBI (James Malone and Simon Jupp) and a team from Stanford (Trish Whetzel and Paul Alexander). We will cover topics such as the OWL ontology language, working with RDF and SPARQL, and how to work with ontologies

Final call: 1st UK Ontology Network Workshop

://www.ukontology.org/ukon_workshop_2012.html Best Regards, James Malone & Robert Stevens -- European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, United Kingdom Tel: + 44 (0) 1223 494 676 Fax: + 44 (0) 1223 494 468

Re: MAGE-TAB in RDF

blic, that would be great so that the W3C note could reference it and it could joined into LODD cheers, michael -Original Message- From: James Malone [mailto:mal...@ebi.ac.uk] Sent: Wednesday, November 30, 2011 9:23 AM To: HCLS Cc: Marco Brandizi Subject: MAGE-TAB in RDF All, I had prom

Re: Reminder: BioRDF telcon today + Atlas RDF

Hi, Both Tomasz and I are in a training course next two days so won't be able to attend unfortunately. We would be keen on any feedback for the Atlas RDF though. Tomasz has recently regenerated the Atlas with a great deal more genes included - interestingly though we brought the SPARQL endpoint do

Trying to summarise: Semantic free identifiers

So.. a long but useful discussion. That will teach me to open my big mouth :) Is this fair as the PRIMARY reasons for this difference in opinions: 1. Having semantic information such as a label in a URI makes it easier to, at a glance, grasp some sort of meaning of a class/predicate and makes SPA

Re: My task from last week: Semantic free identifiers

Re: reasons for semantic free identifiers I think it depends on how you are using your data + schema. It may be the case that, for the most part, taking for granted the URI fragment or even just the label for a class and predicate gets you very far. I think it probably does in a lot of cases. Exce

My task from last week: Semantic free identifiers

Hi, On last week's call I was tasked with contacting Chris and Alan regarding the form of the Relations Ontology URIs. There was some concern that the current text fragment (e.g. part_of) would be replaced with a semantic free identifier (e.g. RO_001). They confirmed this is the case. The

Re: GXA triples

fesci-requ...@w3.org] On Behalf Of Michael Miller Sent: 09 June 2011 15:59 To: public-semweb-lifesci@w3.org Cc: Jun Zhao; Tomasz Adamusiak; James Malone Subject: GXA triples hi all, jun zhao has kindly hosted the initial go at triplifying the Gene Expression Atlas (james' and tomasz' effor

Re: GXA triples

data? Cheers, Lena -Original Message- From: public-semweb-lifesci-requ...@w3.org [mailto:public-semweb-lifesci-requ...@w3.org] On Behalf Of Michael Miller Sent: 09 June 2011 15:59 To: public-semweb-lifesci@w3.org Cc: Jun Zhao; Tomasz Adamusiak; James Malone Subject: GXA triples hi all, jun zha

Re: BioRDF telcon on Monday (today) at 11AM EDT / 5PM CET

Hi All, Apologies, yesterday was a National Holiday in the UK which I had forgotten about. I would like to quickly update you on what we are doing though and also to manage expectations a little. Firstly, although I would like to see more of our data in RDF there is no internal mandate for th

Re: Relations in RDF

know if I am explaining myself clearly :-/ M On Wed, 04 May 2011 08:42:21 -0700, James Malone wrote: Hi Scott, All, I was wondering what the general take is on predicates in RDF representations used by the HCLS group. I've been looking at our RDF model for Gene Expression Atlas at EB

Re: Relations in RDF

s for your response. Cheers, James On 04/05/2011 17:04, Jim McCusker wrote: The group I work in at Yale has published a paper on models like this, we try to re-use predicates when possible, and is_about is a core property we use: http://arxiv.org/abs/1012.1648 On Wed, May 4, 2011 at 11:42 AM,

Relations in RDF

Hi Scott, All, I was wondering what the general take is on predicates in RDF representations used by the HCLS group. I've been looking at our RDF model for Gene Expression Atlas at EBI and presently I'm using the same "is_about" relation for a lot of the predicates as this is the lowest level