PharmaOntology / TMO KB Wiki Demo Page.... BROKEN sparql endpoint

Hi, I’d hoped to use some of the work we did for the TMO / TMOKB in a course I’m teaching (now [*]) however I’m finding broken links on this page: http://www.w3.org/wiki/HCLSIG/PharmaOntology/TMKB Virtuoso provisions a : * SPARQL endpoint : http://tm.semanticscience.org/sparql * Full t

Re: COI call Tue 12 Nov

Hi Eric, I'm interested in this, but not sure I will be able to make it. I have an interview and a deadline -- and hoping to get to the meet up tonight… that being said, count me in for the head count - i may be able to phone in if I am not online. thanks, joanne On Nov 11, 2013, at 7:58 PM,

Re: Semantic Web Challenge winner - in HCLS domain

Congratulations! Well done! We have some history at ISWC, and your email brings back fond memories of ISWC 2005 (Galway). Both keynotes brought attention to life sciences. I was at Harvard and a Manchester at the time working on primarily BioPAX, the first application of OWL in the life scien

seeking consulting or full-time position in realizing the future of medicine

Dear All, I was inspired my Lena's posting of the position at Foundation Medicine and thought that you might like to know that I'm on the market for a new position. I was so excited to be at RPI where they understand semantic technologies, indeed we create them, and didn't fully appreciate the

Re: HCLS call - Tuesday September 10

Hi Michel, Thanks for leading/organizing. I was on the call today, and while we had consensus around these topics, it wasn't my impression that we agreed or finalized the decision. I for one felt it would be worthwhile to open the question to the broader community (on this mailing list), get

Re: Encoding the Hamilton Depression Rating Scale….

46.pdf Kind Regards Kerstin 2013/7/10 Luciano, Joanne S. mailto:luci...@rpi.edu>> Looking for some thoughts on this… We're creating an ontology for the hamilton depression rating scale (this is the clinical instrument used in all clinical trials of antidepressants). Would it be good

Re: dial-in details for COI call in 30 mins [Was: a random subject line: asdf]

I won't be able to make it today. Does anyone have any comments about MLHIM? http://www.mlhim.org/ I was asked about it and upon quick limited research last night, it seems to be XML-Schema based therefore less desirable than RDF (for reasons discussed in previous years). Is that consistent wi

Encoding the Hamilton Depression Rating Scale….

Looking for some thoughts on this… We're creating an ontology for the hamilton depression rating scale (this is the clinical instrument used in all clinical trials of antidepressants). Would it be good to build this under SIO? if so, where i think it fits, is under process (the depression tre

Re: Protege on MacOS 10.7 and 10.8: OWLViz broken; no version of graphviz seems to work

nk you. Best, Djoko From: Luciano, Joanne S. [mailto:luci...@rpi.edu<http://rpi.edu>] Sent: Sunday, June 23, 2013 12:21 AM To: Rafael Richards; Sayogo, Djoko Sigit Cc: public-semweb-lifesci hcls; Andersen, David F; Depaula, Nicolau F; Weijia Ran Subject: Re: Protege on MacOS 10.7 and 10

Re: Protege on MacOS 10.7 and 10.8: OWLViz broken; no version of graphviz seems to work

Hi Rafael, We had a problem Thursday with OWL Viz, however I don't think it was a Mac issue. My initial impression was that it was an installation issue (wasn't on my machine), but now I recall Djoko saying that it wasn't an install issue. Djoko - please fill in. (My suggestion was to check t

Lunchtime meet up - HEALTH DATAPALOOZA - (JUNE 3 and 4 2013) Washington DC

Hey HCLSIGers, Anyone wanting to meet for lunch today (12:30) head to the BLUE room. I'll be wearing a blue jacket. Looking forward to seeing you! Joanne ~~ Research Associate ProfessorJoanne S. Luciano, PhD Deputy Director, Web Science Research

Re: LLD - dataset description meeting

FWIW, I had 11 AM in my calendar. My 10 AM slot is taken too. Also - is there an agenda? Joanne On Apr 15, 2013, at 4:29 AM, "M. Scott Marshall" mailto:mscottmarsh...@gmail.com>> wrote: Hi Michel, Thanks for sending the fuzebox invite. Didn't we agree at our last meeting to have the next meet

Webinar Invitation: Join us for "Virtual Red Chair - Women in Web Science" April 17th

FYI Apologies for cross-posting (hard not to do in such a multidisciplinary field as web science). Thanks Joanne ~~ Joanne S. Luciano, PhD Deputy Director, Web Science Research Center Tetherless World Constellati

Re: FDA: Semantic Web Technologies Fellowship

Great news and thanks for these links Kerstin and for this: In the last part of his talk: Talking to Machines he says "That it's odd how we share results of RCTs (Randomised, Controlled Trials) in C19th essay format!" This is also how Cochrane Collaboration share revi

Re: HCLSIG F2F @ CSHALS

This is bad. Let's get a head count first and see what we can figure out. Please - add CSHALS- attendee next to your name and if you're name's not on this list, add it: http://www.w3.org/wiki/HCLSIG/Cambridge_F2F_2013 Joanne ~~ Joanne S. Luci

Re: Wow....

These are really helpful. Thanks Alan. Joanne On Feb 5, 2013, at 10:17 AM, Alan Ruttenberg mailto:alanruttenb...@gmail.com>> wrote: Don't know if you're all aware of a number of projects which are trying to crowdsource information about prior art or otherwise working in order to help combat

Re: Local HCLS meeting during CSHALS on Friday March 1, 2013

..@iscb.org> 1+780-414-1663 On 2013-02-06, at 3:12 PM, Luciano, Joanne S. wrote: It's the same group. Not sure if there are two meetings in discussion or one. I could imagine the HCLSIGers to want to meet for dinner and drinks. Joanne On Feb 6, 2013, at 5:00 PM, "Luciano, Joanne

Re: Local HCLS meeting during CSHALS on Friday March 1, 2013

It's the same group. Not sure if there are two meetings in discussion or one. I could imagine the HCLSIGers to want to meet for dinner and drinks. Joanne On Feb 6, 2013, at 5:00 PM, "Luciano, Joanne S." mailto:luci...@rpi.edu>> wrote: Michel, Ted, Steven, Charlie, Eri

Local HCLS meeting during CSHALS on Friday March 1, 2013

Michel, Ted, Steven, Charlie, Eric, Re: http://www.w3.org/wiki/HCLSIG/Cambridge_F2F_2013 Let's be sure we arrange ahead of time that those interested in attending the HCLSIG meeting during CSHALS on Friday March 1, 2013 can attend. Perhaps the CSHALS participants get box lunch? or there's some

Re: Wow....

Yes, wow. And what are the implications? It is an application, which isn't the same as a patent. It's not clear to me that it would be granted because, if I recall correctly, it has to not be obvious how to do it to someone who practices in the field. My patents are from 2000 and 2001, so it'

Re: HCLSIG F2F @ CSHALS

Count me in. Joanne On Jan 16, 2013, at 11:14 AM, Michel Dumontier mailto:michel.dumont...@gmail.com>> wrote: Hi everybody, on the current clinical pharmacogenomics call we raised the possibility of have an impromptu face to face meeting at CSHALS in boston at the end of february http://w

Re: Exploring the Semantic Web and its relevance to clinical and life sciences - BioMed Central blog

Done. Thanks. On Jan 8, 2013, at 9:33 AM, Bob Futrelle mailto:bob.futre...@gmail.com>> wrote: Various EHR announcements have been on the bionlp.org<http://bionlp.org/> mailing list, so you might add this note. Happy New Year! - Bob On Tue, Jan 8, 2013 at 8:55 AM, Lucia

Journal of Biomedical Semantics - Today launched a thematic series in Semantics in Healthcare and Life Science

Happy to announce the Journal of Biomedical Semantics launch today of the thematic series on Semantic Technologies in Healthcare and Life sciences…. http://www.jbiomedsem.com/series/SWAT4LSCSHALS [Journal of Biomedical Semantics] Search this journal BioMed Central

Paris this week?

Hi, I'm in Paris this week. Who on this list is also in Paris and might want to meet up on Tuesday or Thursday evening? Are there any sem-web meetups here or HCLS activity? Something else? Web Science? Cultural? Joanne

Fwd: November 16th f2f Meeting, Boston [via Web Observatory Community Group]

FYI… (for those in Boston Area Nov 16) Begin forwarded message: Resent-From: mailto:public-webobservat...@w3.org>> From: Megan Meredith-Lobay mailto:megan.meredith-lo...@oerc.ox.ac.uk>> Subject: November 16th f2f Meeting, Boston [via Web Observatory Community Group] Date: November 9, 2012 5:44:5

Re: Telecon CANCELED: Clinical Decision Support for Personalized Medicine

Would someone with access update the HCLS google calendar to reflect the cancellation. And let us know who has access. Thanks, Joanne On Aug 8, 2012, at 11:07 AM, Matthias Samwald wrote: The CDS teleconference tomorrow is cancelled. (once again, let's reduce the number of teleconferences while

Re: [linkedlifew3cnote] Fwd: Proofs of [WEBSEM_275]

On Jul 6, 2012, at 1:25 PM, M. Scott Marshall wrote: > Thanks Richard! Looks like we're almost done. > > After a doodle poll to expression RDF participants, we've arrived at > 12PM ET / 6PM CET (one hour later than the normal Linked Life Data > time) on Monday July 9 to recalibrate the effort of

Re: Systems Biology / W3C telco - TODAY at 11AM EST

Sorry to have to miss this. I'm at UAB with Jonas Almedia, gave a talk yesterday in their Innovation Forum on Big Data on Data Driven Medicine: Data, Not Programs; Sharing, Not Hoarding; Individuals, Not Populations . SBML - I'm delighted to hear Mike Hucka is presenting and that Michel will be

Re: Semantic Wikis: A Comprehensible Introduction with Examples from the Health Sciences

Hi Maged, The links didn't work for me. Ones that did areL Article: http://ojs.academypublisher.com/index.php/jetwi/article/view/01019496 PDF: http://ojs.academypublisher.com/index.php/jetwi/article/view/01019496/11.

Re: RDF Schema / LODD mapping -- Re: New proposal: health & medical extensions to schema.org

ormatics, LLC > stu...@leafpath.org | +1.916.596.0255 | @ Skype > http://leafpath.org | FOAF: http://stuartturner.org/foaf.rdf > > > On May 23, 2012, at 1:45 PM, Luciano, Joanne S. wrote: > >> Do they? The body does. The memory doesn't, in digital space: >> >> Wh

Re: RDF Schema / LODD mapping -- Re: New proposal: health & medical extensions to schema.org

Do they? The body does. The memory doesn't, in digital space: What happens to their data? Does their data disappear? Their medical record? They "were" a patient. Not sure what that means - maybe we need, in addition to is_a a new class was_a (for the has beens). some things to muse about.

Fwd: [webscience-announce] Health @ ACM Web Science Conference 2012

Part of the way forward in health is empowerment of the individual through the Web. We're having our 2nd workshop on Health Web Science next month in conjunction with the ACM Web Science conference. I can highly recommend both (but I' biased) cheers, Joanne Begin forwarded message: From: Susa

O'Reilly conference: Strata Rx

From: Andy Oram mailto:an...@oreilly.com>> http://oreil.ly/L1CqrJ Please pass it around widely. This is our latest foray into health. It was chosen because we hope to reach institutions who have the incentives and the funds to use data. As you can see, though, the scope covers a lot.

CFP - Health Web Science *HWSW2012 - CALL FOR PAPERS*

Please circulate to your contacts in the Web Science community ... *HWSW2012 - CALL FOR PAPERS* 2nd Health Web Science Workshop A workshop at Web Science 2012. Friday June 22, 2012, Evanston, IL, USA, Next to Chicago on the shores of Lake Michigan http://www.websci12.org/ http://www.unbsj.ca/sase

RE: Vispedia: Interactive Visual Exploration of Wikipedia Data via Search-Based Integration

2008 1:21 PM >To: eric neumann >Cc: Luciano, Joanne S.; Maged N.K. Boulos; public-semweb-lifesci@w3.org >Subject: Re: Vispedia: Interactive Visual Exploration of Wikipedia Data >via Search-Based Integration > >Hi Eric, > >My personal view is that Exhibit and Vispedia s

RE: Vispedia: Interactive Visual Exploration of Wikipedia Data via Search-Based Integration

This is the Wikipedia data: Age Incidence (new affected) per thousand person–years 65–69  3 70–74  6 75–79  9 80–84 23 85–89 40 90–   69 This is the Vispedia output. I haven't had time to retrace the construction ... or to try it myself, but there

Journal of BioInformatics Special Issue on Semantic Biomedical Mashup officially published

FYI.. (sorry for cross-posts) Just released... the special Issue of the Journal of Biomedical Informatics: Semantic BioMed Mashup, Volume 41, Issue 5, October 2008. Special Issue Editors: Kei-Hoi Cheung, Huajun Chen, Yimin Wang, Susie Stephens, Joanne Luciano, Vipul Kashyap. http://www.

CFP: 1st Annual ISCB Conference on Semantics in Healthcare & Life Sciences

Apologies for cross-posts & please forward to interested parties. Thanks, Joanne CALL FOR PARTICIPATION - C-SHALS 2008, Cambridge, MA, USA www.iscb.org/cshals2008/ The 1st Annual ISCB Conference on Semantics in Healthcare & Life Sciences is a new breakthrough event bringing pharma, healthcare

RE: RE: [BioPAX-discuss] ISMB 2007 / Meeting of Semantic Web -interested people

I ran into Andrea Splendiani outside and a few others who were denied access because the place was full. While it is hard to organize via email, if anything else is organized, do post to email too - as well as on the message board. Joanne >-Original Message- >From: [EMAIL PROTECTED] >

RE: [BioPAX-discuss] ISMB 2007 / Meeting of Semantic Web - interestedpeople

Sounds good -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Matthias Samwald Sent: Saturday, July 21, 2007 11:47 AM To: public-semweb-lifesci; [EMAIL PROTECTED] Cc: [EMAIL PROTECTED]; Eric Neumann; [EMAIL PROTECTED] Subject: [BioPAX-discuss] ISMB 2007 /