Re: [BiONT][BioRDF] Mussels

2006-05-04 Thread Steve Chervitz
It would be nice if they provided links into the NCBI taxonomy.) Steve > From: chris mungall <[EMAIL PROTECTED]> > Date: Thu, 4 May 2006 15:38:07 -0700 > To: Steve Chervitz <[EMAIL PROTECTED]> > Cc: Alan Ruttenberg <[EMAIL PROTECTED]>, > Subject: Re: [BiONT][BioRD

Re: [BiONT][BioRDF] Mussels

2006-05-04 Thread chris mungall
the Order level, but this is just a matter of fleshing out the wikispecies database. Steve From: Alan Ruttenberg <[EMAIL PROTECTED]> Date: Thu, 4 May 2006 01:42:16 -0400 To: Subject: Re: [BiONT][BioRDF] Mussels Resent-From: Resent-Date: Thu, 04 May 2006 05:42:38 + Another thought

Re: [BiONT][BioRDF] Mussels

2006-05-04 Thread Steve Chervitz
<[EMAIL PROTECTED]> > Date: Thu, 4 May 2006 01:42:16 -0400 > To: > Subject: Re: [BiONT][BioRDF] Mussels > Resent-From: > Resent-Date: Thu, 04 May 2006 05:42:38 + > > > Another thought is to use wikipedia URL's as the identifier - there > are often matc

Re: [BiONT][BioRDF] Mussels

2006-05-04 Thread June Kinoshita
On May 4, 2006, at 4:47 AM, Matthias Samwald wrote: One of them is mussels. Q: what should this resolve to? It seems that this is a VERY common problem when one has to map existing taxonomies and classification schemes. Many of them do not have a concise class-subclass structure. Two

RE: [BiONT][BioRDF] Mussels

2006-05-04 Thread Miller, Michael D (Rosetta)
M > To: public-semweb-lifesci@w3.org > Subject: Re: [BiONT][BioRDF] Mussels > > > > Another thought is to use wikipedia URL's as the identifier - there > are often matches at this level of description. The downside is that > you lose the superclass relations that you

Re: [BiONT][BioRDF] Mussels

2006-05-04 Thread Matthias Samwald
> One of them is mussels. Q: what should this resolve to? It seems that this is a VERY common problem when one has to map existing taxonomies and classification schemes. Many of them do not have a concise class-subclass structure. Two examples I had to deal with already are Entrez Taxonomy an

Re: [BiONT][BioRDF] Mussels

2006-05-03 Thread Alan Ruttenberg
Another thought is to use wikipedia URL's as the identifier - there are often matches at this level of description. The downside is that you lose the superclass relations that you have in taxonomy, e.g. the ability to query for mammal, and get back all the primates, mice, rats, etc. e.

[BiONT][BioRDF] Mussels

2006-05-03 Thread Alan Ruttenberg
Here is a typical problem that arises when translating databases. I'm reviewing the species that are mentioned as being reactive to various of the antibodies in the Alzforum database. One of them is mussels. Q: what should this resolve to? I'm looking at the NCBI taxonomy. There are a bun