Re: GXA triples

2011-07-10 Thread Peter Ansell
On 11 July 2011 04:55, Helena Deus wrote: > Hi, > I am trying to find where the description of the genes in the GXA sparql > endpoint can be found (in RDF to that it can be pulled into the query): > SPARQLing GXA, I get a list of genes from an experiment; each gene looks > something like this: > "

Re: GXA triples

2011-07-10 Thread Helena Deus
Hi, I am trying to find where the description of the genes in the GXA sparql endpoint can be found (in RDF to that it can be pulled into the query): SPARQLing GXA, I get a list of genes from an experiment; each gene looks something like this: " http://www.ensembl.org/Gene/Summary?g=ENSMUSG005

RE: GXA triples

2011-07-08 Thread Michael Miller
LSIG_BioRDF_Subgroup/MicroarrayExperimentContext. cheers, michael > -Original Message- > From: Helen Parkinson [mailto:parkin...@ebi.ac.uk] > Sent: Friday, July 08, 2011 7:44 AM > To: Michael Miller > Cc: tomasz.adamus...@ebi.ac.uk; public-semweb-lifesci@w3.org > Subject: Re: GXA triples > >

Re: GXA triples

2011-07-08 Thread Helen Parkinson
: public-semweb-lifesci-requ...@w3.org [mailto:public-semweb- lifesci-requ...@w3.org] On Behalf Of Tomasz Adamusiak Sent: Friday, July 08, 2011 3:57 AM To: public-semweb-lifesci@w3.org Subject: GXA triples Hi, [Resending as my original email seems to be lost in moderation.] Jun has kindly

RE: GXA triples

2011-07-08 Thread Michael Miller
Biology > -Original Message- > From: public-semweb-lifesci-requ...@w3.org [mailto:public-semweb- > lifesci-requ...@w3.org] On Behalf Of Tomasz Adamusiak > Sent: Friday, July 08, 2011 3:57 AM > To: public-semweb-lifesci@w3.org > Subject: GXA triples > > Hi, > > [

GXA triples

2011-07-08 Thread Tomasz Adamusiak
Hi All, Jun has kindly reloaded a new batch of Atlas triples that James and I generated. In this release there are up to 500 top differentially expressed genes per experiment available and a total number of triples increased from ~37 to ~170 million. More information is available at: http://

GXA triples

2011-07-08 Thread Tomasz Adamusiak
Hi, [Resending as my original email seems to be lost in moderation.] Jun has kindly reloaded a new batch of Atlas triples that James and I generated. In this release there are up to 500 top differentially expressed genes per experiment available and a total number of triples increased from ~37 t

Re: GXA triples

2011-06-10 Thread James Malone
fesci-requ...@w3.org] On Behalf Of Michael Miller Sent: 09 June 2011 15:59 To: public-semweb-lifesci@w3.org Cc: Jun Zhao; Tomasz Adamusiak; James Malone Subject: GXA triples hi all, jun zhao has kindly hosted the initial go at triplifying the Gene Expression Atlas (james' and tomasz' effor

Re: GXA triples

2011-06-09 Thread James Malone
data? Cheers, Lena -Original Message- From: public-semweb-lifesci-requ...@w3.org [mailto:public-semweb-lifesci-requ...@w3.org] On Behalf Of Michael Miller Sent: 09 June 2011 15:59 To: public-semweb-lifesci@w3.org Cc: Jun Zhao; Tomasz Adamusiak; James Malone Subject: GXA triples hi all, jun zha

RE: GXA triples

2011-06-09 Thread Helena Deus
Zhao; Tomasz Adamusiak; James Malone Subject: GXA triples hi all, jun zhao has kindly hosted the initial go at triplifying the Gene Expression Atlas (james' and tomasz' efforts) http://www.open-biomed.org.uk/sparql/endpoint/gxa > To access a UI for the SPARQL endpoint, please go to

Re: GXA triples

2011-06-09 Thread Jun Zhao
Dear all, Note that we also have a wiki page documenting some example SPARQL queries: http://code.google.com/p/open-biomed/wiki/GeneExpressionAtlas cheers, Jun On 09/06/11 15:58, Michael Miller wrote: hi all, jun zhao has kindly hosted the initial go at triplifying the Gene Expression Atlas

GXA triples

2011-06-09 Thread Michael Miller
hi all, jun zhao has kindly hosted the initial go at triplifying the Gene Expression Atlas (james' and tomasz' efforts) http://www.open-biomed.org.uk/sparql/endpoint/gxa > To access a UI for the SPARQL endpoint, please go to: > > 1. http://www.open-biomed.org.uk/sparql/query.html > 2. and set pa