ontologies...
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
On Feb 25, 2009, at 11:58 AM, Andrea Splendi
It'2 240M, but compressed is only 9.
I wonder whether there is some architecture to transparently
transfer
compressed ontologies...
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc
er whether there is some architecture to transparently
transfer
compressed ontologies...
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an
> From: Andrea Splendiani
>
> One thing that I think would be very useful, though it poses some
> semantic problem... is the possibility to assert equivalence in rdf.
> At the moment equivalence can be asserted only in owl (and this
> implies a distinction between individuals, properties, clas
drea splendiani (RRes-Roth) wrote:
>>>
>>>
>>>
>>>>Thanks!
>>>>
>>>>It'2 240M, but compressed is only 9.
>>>>I wonder whether there is some architecture to transparently transfer
>>>>compressed ontologies...
&
h)
Cc: public-semweb-lifesci hcls; Vladimir Mironov; Martin Kuiper
Subject: Re: Is there an NCBI taxonomy in OWL ?
Hi Andrea,
you can find an RDF at
http://www.semantic-systems-biology.org/biogateway/resources#ncbi
and play with it from:
http://www.semantic-systems-biology.org/biogateway/que
arently
transfer
compressed ontologies...
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
On Feb 25, 2009, at 11:
nsparently
transfer
compressed ontologies...
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
On Feb 25, 2009
re to transparently transfer
compressed ontologies...
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
On Feb 25, 2009,
ngall [mailto:c...@berkeleybop.org] Sent: 25 February
2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote:
Hi,
I was looking for an NCBI Taxnomoy in OWL, but I didn't f
that slim. I know others who would be interested in a
similar resource.
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxo
To: public-semweb-lifesci@w3.org
Subject: Re : Is there an NCBI taxonomy in OWL ?
Hi Andrea,
this is not an answer to your query but you or others might be interested by
this post I wrote a few monthes ago:
http://plindenbaum.blogspot.com/2008/11/taxonomy-and-semantic-web-writing.html
In this
ndrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote:
Hi,
I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or
better, could find fragment from other projects
given organism. The data were stored in mysql.
Pierre Lindenbaum
- Message d'origine
De : Andrea Splendiani
À : public-semweb-lifesci hcls
Envoyé le : Mercredi, 25 Février 2009, 20h58mn 55s
Objet : Is there an NCBI taxonomy in OWL ?
Hi,
I was looking for an NCBI Taxnomoy in OWL,
some architecture to transparently transfer
compressed ontologies...
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
O
is some architecture to transparently transfer
>> compressed ontologies...
>>
>> Ciao,
>> Andrea
>>
>> -Original Message-
>> From: Chris Mungall [mailto:c...@berkeleybop.org]
>> Sent: 25 February 2009 20:53
>> To: andrea splendiani (RRes-Rot
ublic-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote:
Hi,
I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or
better, could find fragment from other projects...)
What is strange though, is that on the o
was getting at something specific for
ontologies, rather than more general for HTTP.)
Lee
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: I
im. I know others who would be interested in a
similar resource.
Ciao,
Andrea
-Original Message-
From: Chris Mungall [mailto:c...@berkeleybop.org]
Sent: 25 February 2009 20:53
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
emweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
Hi Andrea,
I have been using the Neurocommons SPARQL endpoint at
http://sparql.neurocommons.org/
(e.g. http://tinyurl.com/dgspfr)
You can also use the LOD one at http://lod.openlinksw.com/sparql
Cheers,
Melanie
On 25-Feb-09, at
-Roth)
Cc: public-semweb-lifesci hcls
Subject: Re: Is there an NCBI taxonomy in OWL ?
On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote:
> Hi,
>
> I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or
> better, could find fragment from other projects...)
>
ere.
Ciao,
Andrea
-Original Message-
From: Erick Antezana [mailto:er...@psb.ugent.be]
Sent: 25 February 2009 20:51
To: andrea splendiani (RRes-Roth)
Cc: public-semweb-lifesci hcls; Vladimir Mironov; Martin Kuiper
Subject: Re: Is there an NCBI taxonomy in OWL ?
Hi Andrea,
you can fi
On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote:
Hi,
I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or
better, could find fragment from other projects...)
What is strange though, is that on the obo foundry website
(berkeleybop.org/ontologies) there are notes on th
Hi Andrea,
you can find an RDF at
http://www.semantic-systems-biology.org/biogateway/resources#ncbi
and play with it from:
http://www.semantic-systems-biology.org/biogateway/querying
I would also recommend taking a look at the work of Schulz et al:
http://bioinformatics.oxfordjournals.org/c
Hi Andrea,
I have been using the Neurocommons SPARQL endpoint at http://sparql.neurocommons.org/
(e.g. http://tinyurl.com/dgspfr)
You can also use the LOD one at http://lod.openlinksw.com/sparql
Cheers,
Melanie
On 25-Feb-09, at 11:58 AM, Andrea Splendiani wrote:
Hi,
I was looking for an
Hi,
I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or
better, could find fragment from other projects...)
What is strange though, is that on the obo foundry website
(berkeleybop.org/ontologies) there are notes on the ncbi taxonomy
representation in owl... but not the rep
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