Hi Phil,
I'm not sure I
understand why having a class DataBank makes this owl full, perhaps you
could explain a bit more. But in general, not much about these ontologies
was deliberate so any discovered oversites like the potential one you pointed
out are appreciated.
- Ben
Phillip Lor
Hi All,
I'm new to this list and I only did
a cursory reading of the archives so I apologize if I add anything that
has already been addressed. As some of you know, Stephen Evanchik
and myself are the lead developers on the LSID Toolkit. I have implemented
a prototype LSID Resolution Service
One other thing to bear in mind is that many of the IDs that are
purported to be NCBI nucleotide sequence IDs are actually NCBI/EMBL/
DDBJ IDs. See http://www.insdc.org/
Presumably the ID scheme should reflect this?
On Tue, 2006-05-09 at 10:12 -0700, Mark Wilkinson wrote:
> Are there limits on the number of retrievals that can be done in a day
> on these URLs? i.e. will my domain get blacklisted if I pull in 100K
> records every hour?
Yes. Here are the rules:
http://eutils.ncbi.nlm.nih.gov/entrez/query/s
On 09 May 2006, at 13:12, Mark Wilkinson wrote:
I stand corrected :-)
Are there limits on the number of retrievals that can be done in a day
on these URLs? i.e. will my domain get blacklisted if I pull in 100K
records every hour?
# Run retrieval scripts on weekends or between 9 pm and 5 am
Thanks, I like this proposal, Larry. You are right - it works now and
satisfies the requirement.
I amend my proposal to be:
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=
DATABASE_GOES_HERE>&
e.g.
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=596
http:
> http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?
>
> which just brings back the raw data. Details here:
>
> http://eutils.ncbi.nlm.nih.gov/entrez/query/static/efetch_help.html
These kinds of URIs are more used as API. It will be difficult to use them
in the context of SW to
I stand corrected :-)
Are there limits on the number of retrievals that can be done in a day
on these URLs? i.e. will my domain get blacklisted if I pull in 100K
records every hour?
M
On Tue, 2006-05-09 at 10:58 -0600, Larry Hunter wrote:
> On Tue, 2006-05-09 at 09:16 -0700, Mark Wilkinson w
On Tue, 2006-05-09 at 09:16 -0700, Mark Wilkinson wrote:
> H yeah, that's true... but my "gut" does a back-flip when I am
> forced to use a URI that refers to a web page, complete with fancy NCBI
> decorations and menu's
You're mistaken about that. If you don't want the decorations, the
H yeah, that's true... but my "gut" does a back-flip when I am
forced to use a URI that refers to a web page, complete with fancy NCBI
decorations and menu's :-)
I think what we are REALLY looking for is an identifier of a data-
entity, independent of its representation. This is what t
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