On 11 July 2011 04:55, Helena Deus wrote:
> Hi,
> I am trying to find where the description of the genes in the GXA sparql
> endpoint can be found (in RDF to that it can be pulled into the query):
> SPARQLing GXA, I get a list of genes from an experiment; each gene looks
> something like this:
> "
Hi,
I am trying to find where the description of the genes in the GXA sparql
endpoint can be found (in RDF to that it can be pulled into the query):
SPARQLing GXA, I get a list of genes from an experiment; each gene looks
something like this: "
http://www.ensembl.org/Gene/Summary?g=ENSMUSG005
LSIG_BioRDF_Subgroup/MicroarrayExperimentContext.
cheers,
michael
> -Original Message-
> From: Helen Parkinson [mailto:parkin...@ebi.ac.uk]
> Sent: Friday, July 08, 2011 7:44 AM
> To: Michael Miller
> Cc: tomasz.adamus...@ebi.ac.uk; public-semweb-lifesci@w3.org
> Subject: Re: GXA triples
>
>
Hi Michael
it would help to prioritize what to represent if we had a set of
concrete use cases for the points you mention. We can generate RDF for
lots of elements of the experiments of course -
cheers
Helen
On 08/07/2011 15:37, Michael Miller wrote:
hi tomasz,
thanks for the update, nice
hi tomasz,
thanks for the update, nice! and again to jun for hosting.
the documentation is appreciated, interestingly enough, in the diagram, it
looks like it is only the relationship between the experiment, the set of
sequences and their differential measurements per experimental factor
value.
Just FYI since a few people have emailed me offline about why they
aren't seeing their gene of interest when they query the RDF; this first
pass only selected the top 10 differentially epxressed genes per
experiment. We are going to expand this in our second run shortly to get
almost all of the
Hi Helena,
Only a little part of it, I'll publish the model with a small diagram
soon. This is an initial iteration so we will improve this in the future.
Cheers,
James
On 09/06/2011 17:28, Helena Deus wrote:
Hi All
That is fantastic news :-)
Was the EFO model used for this data?
Cheer
Hi All
That is fantastic news :-)
Was the EFO model used for this data?
Cheers,
Lena
-Original Message-
From: public-semweb-lifesci-requ...@w3.org
[mailto:public-semweb-lifesci-requ...@w3.org] On Behalf Of Michael Miller
Sent: 09 June 2011 15:59
To: public-semweb-lifesci@w3.org
Cc: Jun
Dear all,
Note that we also have a wiki page documenting some example SPARQL queries:
http://code.google.com/p/open-biomed/wiki/GeneExpressionAtlas
cheers,
Jun
On 09/06/11 15:58, Michael Miller wrote:
hi all,
jun zhao has kindly hosted the initial go at triplifying the Gene Expression
Atlas
