Re: HCLS chartering/next steps Thur 26 May

2011-06-01 Thread Eric Prud'hommeaux
Hi all again. Last week we had some good idea exchange about what we should put into the next HCLSIG charter, i.e. what we tell the world we are doing. We agreed that we weren't done and that we'd like to meet in one week. I invite all to meet tomorrow, Thursday 2 June. Details at the bottom of the

Re: HCLS chartering/next steps Thur 26 May

2011-05-27 Thread Mikel Egaña Aranguren
Hi; On or., 2011.eko mairen 27a 08:35, Andrea Splendiani wrote: Hi, long thread... I'm answering to this post, but I have read through it down (at least to some point, I'm offline now). two things: - as for marketing and engagement of outside community, I'm not sure having technological-orien

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Andrea Splendiani
Hi, long thread... I'm answering to this post, but I have read through it down (at least to some point, I'm offline now). two things: - as for marketing and engagement of outside community, I'm not sure having technological-oriented task forces is that bad. Sure BioRDF and LODD are confusing, be

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Andrea Splendiani
Hi, long thread... I'm answering to this post, but I have read through it down (at least to some point, I'm offline now). two things: - as for marketing and engagement of outside community, I'm not sure having technological-oriented task forces is that bad. Sure BioRDF and LODD are confusing, be

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Joanne Luciano (gmail)
> * I included all basic sciences in this category inc. environmental science > (unless it pertains to health, then it falls into translational). > >> -Original Message- >> From: Rafael Richards [mailto:rafaelricha...@jhu.edu] >> Sent: Thursday, May 26, 2011 11:45

RE: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Michel_Dumontier
jhu.edu] > Sent: Thursday, May 26, 2011 11:45 AM > To: Michel_Dumontier > Cc: public-semweb-lifesci@w3.org > Subject: Re: HCLS chartering/next steps Thur 26 May > > Michel, > > I concur. As the overwhelming emphasis of the HCLS is in the lifesciences > (biology, basic res

RE: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Michael Miller
wald > Cc: Tim Clark; public-semweb-lifesci@w3.org > Subject: Re: HCLS chartering/next steps Thur 26 May > > On Thu, 2011-05-26 at 16:43 +0200, Matthias Samwald wrote: > > I agree with Tim's ideas. The different task forces should be > > problem-focused. This would a

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread David Booth
On Thu, 2011-05-26 at 16:43 +0200, Matthias Samwald wrote: > I agree with Tim's ideas. The different task forces should be > problem-focused. This would also help to reduce the redundancy between > task forces (for example, the original idea of BioRDF was mainly to > convert biomedical data to RDF,

RE: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Michael Miller
lem space gives us a lot to work on. cheers, michael *From:* Tim Clark [mailto:twcl...@nmr.mgh.harvard.edu] *Sent:* Thursday, May 26, 2011 8:56 AM *To:* Michael Miller *Cc:* HCLS IG *Subject:* Re: HCLS chartering/next steps Thur 26 May HI Michael, As I said, problem focused activitie

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Tim Clark
Agree - again, same as I said in remarks to Michael Miller. On May 26, 2011, at 11:51 AM, M. Scott Marshall wrote: > Hi Tim, > > I agree with the principle. Just want to point out that the > Terminology task force has been looking at a very specific problem - > detecting discrepancies between

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Tim Clark
w3.org > [mailto:public-semweb-lifesci-requ...@w3.org] On Behalf Of Helena Deus > Sent: Thursday, May 26, 2011 7:45 AM > To: Joanne Luciano > Cc: Tim Clark; HCLS IG; Mikel Egaña Aranguren > Subject: Re: HCLS chartering/next steps Thur 26 May > > Hi all, > > I agree wi

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread M. Scott Marshall
Hi Tim, I agree with the principle. Just want to point out that the Terminology task force has been looking at a very specific problem - detecting discrepancies between clinical reports from radiology and pathology: http://www.w3.org/wiki/HCLSIG/Terminology/PathRadCorrelation The main problem pro

RE: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Michael Miller
. cheers, michael *From:* public-semweb-lifesci-requ...@w3.org [mailto: public-semweb-lifesci-requ...@w3.org] *On Behalf Of *Helena Deus *Sent:* Thursday, May 26, 2011 7:45 AM *To:* Joanne Luciano *Cc:* Tim Clark; HCLS IG; Mikel Egaña Aranguren *Subject:* Re: HCLS chartering/next steps Thur 26 May

RE: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Michel_Dumontier
as Samwald Sent: Thursday, May 26, 2011 10:43 AM To: Tim Clark; public-semweb-lifesci@w3.org Subject: Re: HCLS chartering/next steps Thur 26 May I agree with Tim's ideas. The different task forces should be problem-focused. This would also help to reduce the redundancy between task forces (fo

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Matthias Samwald
other task forces such as LODD). - Matthias From: Tim Clark Sent: Thursday, May 26, 2011 3:55 PM To: HCLS IG Cc: Mikel Egaña Aranguren ; Helena Deus Subject: Re: HCLS chartering/next steps Thur 26 May Dear HCLS colleagues I guess my comment would be, setting Translational Medicine as a

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Helena Deus
Hi all, I agree with a focus on creating "problem-centric" task forces - to be honest, I always felt bioRDF to be a problem-centered group (i.e. trying to solve a current problem in life sciences, not looking for a problem given a solution). I do believe, however, that we need to make sure that w

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Chris Baker
Beyond the target areas, do we have any guidelines on the skill sets that are for a project to proceed / succeed. How much clinical knowledge is required from the team to facilitate a meaningful contribution to clinical practice based on a robust semantic implementation. Likewise what amount of kno

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Joanne Luciano
Tim, Thanks for your thoughts. I agree with you and would like to add an evaluation criteria component - these efforts (imo) should be targeted at having an impact on clinical outcome. Joanne ~~ Joanne S. Luciano, PhD

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Mark
On Thu, 26 May 2011 06:55:07 -0700, Tim Clark wrote: I would lose the solution-based Task Groups and reformulate them as problem-based. for example, BioRDF has been working on gene lists for transcriptomic experiments, we might recharter that Task Group to work on Genomic Experiments

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Iker Huerga
Hi, I guess my comment would be, setting Translational Medicine as a major priority = ok, making it the only priority = not ok. +1 My personal recommendation would be to formulate the charter around accelerating biomedical research and promoting cross-discipline sharing, across the full

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Joanne Luciano (gmail)
Tim, Thanks for your thoughts. I agree with you and would like to add an evaluation criteria component - these efforts (imo) should be targeted at having an impact on clinical outcome. Joanne On May 26, 2011, at 9:55 AM, Tim Clark wrote: > Dear HCLS colleagues > > I guess my comment would be

RE: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Michel_Dumontier
-semweb-lifesci-requ...@w3.org [mailto:public-semweb-lifesci-requ...@w3.org] On Behalf Of Tim Clark Sent: Thursday, May 26, 2011 9:55 AM To: HCLS IG Cc: Mikel Egaña Aranguren; Helena Deus Subject: Re: HCLS chartering/next steps Thur 26 May Dear HCLS colleagues I guess my comment would be, setting

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Tim Clark
Dear HCLS colleagues I guess my comment would be, setting Translational Medicine as a major priority = ok, making it the only priority = not ok. TM applications are important, and do potentially integrate many of the things we have all been working on. But they are far from covering all the b

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Andrea Splendiani
I'm not sure we need a different IG. If the focus is integration of data... environment and health are far... but in theory not that far... ciao, Andrea Il giorno 26/mag/2011, alle ore 14.31, Helena Deus ha scritto: > Hi, > > That is a very good point, thanks Mikel and Andrea! > Do you have poin

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Helena Deus
Hi, That is a very good point, thanks Mikel and Andrea! Do you have pointers to such type of data? Shall we consider an IG for "basic" life sciences? The LS part of HCLS has indeed been gaining adepts rapidly and it may make sense to reflect that in the charter. Cheers, Lena 2011/5/26 Mikel Ega

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Mikel Egaña Aranguren
Hi; I should attend the conference call but I just want to add that I concur with Andrea in that the HCLS IG should consider the environmental realm, since loads of new ecological/environment data, with new challenges to be addressed, are waiting to be represented semantically. That's precise

Re: HCLS chartering/next steps Thur 26 May

2011-05-26 Thread Andrea Splendiani
Hi, I see myself as more involved in the next incarnation of the charter ;) Unfortunately, today is a travel day and I cannot attend the conference call. I have two questions/ideas, which don't really map to the current sub-groups, but just in case they ring some bell: -) Is the HCLS exclusively

Re: HCLS chartering/next steps Thur 26 May

2011-05-25 Thread Jun Zhao
Hi Eric, Sorry I won't be able to make the call either. It conflicts with provenance WG's weekly call. But I will keep an eye on the IRC. On 24/05/2011 04:04, Eric Prud'hommeaux wrote: LODD - curation of compounds, clinical trials and outcomes. I am a bit surprised to see this wording

RE: HCLS chartering/next steps Thur 26 May

2011-05-25 Thread Michael Miller
hi eric, thanks for all your hard work, it lets people like me nitpick from the corners. sorry i won't be able to make the teleconference. comments below. > Terminology - identifying and integrating identifiers for biological > processes, gross anatomy and medical procedures to promote >