Hi all,
I have a question regarding the spectrum command and b-factors. How are
the color-ranges calculated by spectrum?
I.e. i would like to know the values for the different shades like in
the color_b.py-script, which gives you not only a total range, but also
the bins.
I would like to
Hi,
Our system administrator of a linux cluster have trouble upgrading from 0.93
to 0.95:
[mfitz...@man local]$ sudo rpm -U --test pymol-0.95-1.rh73.py22.i386.rpm
[mfitz...@man local]$ sudo rpm -U pymol-0.95-1.rh73.py22.i386.rpm
warning: user warren does not exist - using root
warning: user
The warning is ok, just ignore.
And to check the rpm package, use pymol as package name, not with
version numbers.
like 'rpm -q pymol'
Chen
On Thu, 15 Apr 2004, Shu-Hsien Sheu wrote:
Hi,
Our system administrator of a linux cluster have trouble upgrading from 0.93
to 0.95:
[mfitz...@man
On Thu, Apr 15, 2004 at 10:27:32AM -0400, Shu-Hsien Sheu wrote:
[mfitz...@man local]$ sudo rpm -V pymol-0.95-1 package pymol-0.95-1 is
not installed
Just a shot in the dark, but are you sure the package is called
pymol-0.95-1 and not just pymol?
Michael
For example, I found a PDB online called 'pope.pdb' (a cool lipid
bilayer; http://moose.bio.ucalgary.ca/Downloads/) and simply wanted to
select all the hydrophobic tails and hydrophilic heads so that I may
apply different attributes to each. If I need to select the tails,
which in the PDB
Hi Jason,
* Jason Vertrees javer...@utmb.edu [2004-04-14 22:55] wrote:
Master Users,
I'm a bit new to PyMol and still trying to master selections. I've read
the documentation and played with quite a few macromolecules now and
still have some problems with selections.
For example, I
must I do c10+c11+c12...c50?
Yes, unfortunately. However, this long selection:
select tails1, r. pop n.
c17+c18+c19+c20+c21+c22+c23+c24+c25+c26+c27+c28+c29+c30+c31+ca
1+ca2+c36
+c37+c38+c39+c40+c41+c42+c43+c44+c45+c46+c47+c48+c49+c50
Can be replaced with some Python code in your script:
Dan,
First, get down to 26 or fewer objects, then issue the following commands:
objs = cmd.get_names('objects')
pairs = map(None, objs, range(65, 65+len(objs))
for pair in pairs: \
cmd.alter(pair[0], chain='%s'%chr(pair[1]))
NOTE: That last comment will take a little while...
Cheers,
