Hi,
All I want to do is be able to create an electrostatic surface
representation of a simple molecule.
I am seriously overwhelmed by the information for compiling and setting
APBS on their website. I was happy to fine a link to download a
package with an installer, but when I run it it fail
Sorry, I responded off the list last time the the question. You have to
render two pictures:
1. one with slabbing you want for the surface (include the ligand)
2. one with slabbing you want (change clipping planes only) for the ligand
(disable the surface for this)
In photoshop (or equivalent), s
Perhaps someone knows a better way to do this - I'm trying to make a color
gradient on a surface based on distance from some selection using code like
this:
for a in range (1:100):\
cmd.set_color("mycolor",[1,1,a/100])\
cmd.color mycolor, my_surface within ((-1/100*a)+1) of my_selection
Now I
Is it possible to set 2 different slabs/clipping for two different
objects in pymol? i.e. a surface representation cut at a certain slab to
reveal the inside of an active site pocket and a stick representation of a
ligand or something with no slab. I saw a similar question in the
archives but no
