Check out Robert Cambell's scripts
data2bfactor.py
color_b.py
at http://adelie.biochem.queensu.ca/%7Erlc/work/pymol/
Eric
Eva Vanamee wrote:
Hi,
How can I color residues by a certain property?
Let's say I have a list of property (e.g. mutation frequency from 0-1)
for each amino acid residue
Hi,
How can I color residues by a certain property?
Let's say I have a list of property (e.g. mutation frequency from 0-1)
for each amino acid residue in a
given protein. Is it possible to read that list into PyMol and color the
residues by the value of the property.
Can I define the color sca
Howdy,
This is a request to see if someone familiar with Nuccyl would please
add some documentation and comments to the PyMolWiki, possibly with
example images.
I've setup the page on the wiki and put a little introduction to it
(copied from the Nuccyl page). I'm happy to do it myself, but I'd
r
Hi,
I'm wondering if any of you who've delved into the PyMOL source know
what the following line (and subsequent block of code) from the file
"data/chempy/sidechains/generate1.py" refers to:
for fyle in glob("source/*"):
I assume it's something like a sidechain rotamer database, but isn't
Hi all,
The new pymol beta has been fun to play with. I like the scenes
function but am having trouble importing the .psw file into PowerPoint.
I can make a hyperlink as was suggested in the mail list, but this is
not ideal. I need to go through two windows warnings about evil
hyperlinks, the
Hi All,
We are starting up regular PyMOL users group meeting and training sessions
at our South San Francisco location. In order to avoid cluttering up the
pymol-users mailing list, I have created a Yahoo group to handle local
matters such as these meeting announcements.
So, if you are a PyMOL u
Hi,
Have you reported the crashes to NVidia? I'd suggest sending an email
to their linux-b...@nvidia.com mail address. The fact that multiple packages
crash with the new driver indicates that they may have a new bug in their
drivers. You mentioned that making a licorice rep crashes your VMD on
