[PyMOL] can superimpose two protein structures ?

Hi, all, Can I use pymol to superimpose two protein structures ? How should I do? If it cannot, anybody can tell me what program can do superposition very easily? thanks! May 5

[PyMOL] the conserved residues can be overlapped?

Ok, thanks. But, its not what I meant. I want to let 2 proteins automatically overlap according to the amino acid sequence alignment,i.e. the conserved residues can be overlapped. Can I do it use pymol or any other program? thanks May 5 hi, I had a similar question, and here is the answer.

RE: [PyMOL] the conserved residues can be overlapped?

Yunbo, Can I use pymol to superimpose two protein structures ? How should I do? You want the align command. Example usage with 2 pdb files: load prot1.pdb load prot2.pdb align prot1ca, prot2ca It may be necessary to restrict the alignment region to certain chains. For example,

Re: [PyMOL] the conserved residues can be overlapped?

Hi, I was trying to find information online/and in the archives of the mailing list to do what you are asking. You can try help fit which will give you some more commands to try. You can also try help pair_fit. Unfortunately I know I'm doing something wrong so I can't get these commands to work