RE: [PyMOL] Atom name and actual atom not consistent

2005-09-09 Thread Warren DeLano
Donald, Strange! Try making sure that you are running in "millions" of colors mode in the Display settings of System Preferences. If that doesn't solve your problem, then try the latest beta version http://delsci.com/beta to see if the problem still exists with the current code. Cheers, Warren

[PyMOL] Atom name and actual atom not consistent

2005-09-09 Thread Don Ronning
Hi all I just installed MacPyMOL 0.98 on a G5. PyMOL draws the protein correctly and colors the atoms correctly. However, when I click on an atom, say a backbone N, Pymol thinks I just clicked on the carbonyl carbon. It is difficult to draw H-bonds this way, because the bond is made with

RE: [PyMOL] minor irreproducible bugs

2005-09-09 Thread Warren DeLano
Al, Bummer... Next time PyMOL won't start or is acting freaky, can you try launching PyMOL via command line as follows: Start Menu->Run then enter: cmd Assuming PyMOL is in the default location, paste in the following line: "c:\program files\delano scientific\pymol\pymolwin.exe" +2 And then p

[PyMOL] minor irreproducible bugs

2005-09-09 Thread Al_Pierce
I have a couple of problems with pymol 0.98, but they only happen once in a while and for no apparent reason. The problem I'm having right now is that pymol just won't start up. I double-click the pymol icon (or try to open a PDB or pse file), it goes into the 'launching pymol' routine, the p