RE: [PyMOL] Hardware Stereo OSX Tiger 10.4

2005-09-26 Thread Moriarty, Daniel
I've had the same problem as well. I'm using a dual G5 with a Radeon 9800 Pro using the CrystalEyes system. I've also tried getting it work on several different systems running 10.4, and full screen stereo will not work on any of them. If I boot the G5 into 10.3.9, full screen stereo works f

[PyMOL] Hardware Stereo OSX Tiger 10.4

2005-09-26 Thread Stephen Dunham
Hi Can anyone lend support on getting full screen stereo to work with either MacPymol 0.98 or the latest beta 0.99. I am running Mac OS X version 10.4.2 on a dual G5 system with an ATI Radeon 9650 graphics card and a Monitor Z-screen 2000i. I have been able to run the GLUTStereo demo from t

RE: [PyMOL] transparency question

2005-09-26 Thread Warren DeLano
For various legacy reasons, the "transparency" setting only covers surface transparency. Try set sphere_transparency, 0.5 set stick_transparency, 0.5 etc. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., S

RE: [PyMOL] From scenes to movies?

2005-09-26 Thread Warren DeLano
Pete & Dirk, Actually, I think Dirk is looking for something to convert the automatic scene-to-scene camera interpolation into movies...the immediate answer is no -- it isn't yet trivial to do, but we will be working on making that easier before the next release. Cheers, Warren -- Warren L. DeLa

Re: [PyMOL] From scenes to movies?

2005-09-26 Thread Peter Adrian Meyer
Hi Dirk, > a protein structure. Is there a way in PyMOL to export the individual frames for a movie from scenes? If not, this would be my most desired missing feature in PyMOL! Yes. What I do is to use a script to step through each frame of the movie (rotation by 1 degree, zoom in slightly, chan

[PyMOL] From scenes to presentation

2005-09-26 Thread andreas
Dirk is right. Scenes are way nice. What I am wondering is if there is a way of incorporating them into powerpoint a little more smoothly than I currently do. As has been suggested by many, I use a hyperlink to the .psw file. Under XP, this fires up pymol, even if pymol is already running in th

[PyMOL] From scenes to movies?

2005-09-26 Thread Dirk Kostrewa
Hi Warren, the scenes feature in PyMOL is _really_ nice! By choosing appropriate scenes, it does exactly what I would like to show in a movie describing a protein structure. Is there a way in PyMOL to export the individual frames for a movie from scenes? If not, this would be my most desired